2oot

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[[Image:2oot.gif|left|200px]]<br /><applet load="2oot" size="350" color="white" frame="true" align="right" spinBox="true"
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[[Image:2oot.gif|left|200px]]
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caption="2oot, resolution 1.64&Aring;" />
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'''A High Resolution Structure of Ligand-free Human Glutamate Carboxypeptidase II'''<br />
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{{Structure
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|PDB= 2oot |SIZE=350|CAPTION= <scene name='initialview01'>2oot</scene>, resolution 1.64&Aring;
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|SITE=
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|LIGAND= <scene name='pdbligand=NAG:N-ACETYL-D-GLUCOSAMINE'>NAG</scene>, <scene name='pdbligand=ZN:ZINC+ION'>ZN</scene>, <scene name='pdbligand=CA:CALCIUM+ION'>CA</scene> and <scene name='pdbligand=CL:CHLORIDE ION'>CL</scene>
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|ACTIVITY= [http://en.wikipedia.org/wiki/Glutamate_carboxypeptidase_II Glutamate carboxypeptidase II], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=3.4.17.21 3.4.17.21]
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|GENE= FOLH1, FOLH, NAALAD1, PSM, PSMA ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=9606 Homo sapiens])
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}}
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'''A High Resolution Structure of Ligand-free Human Glutamate Carboxypeptidase II'''
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==Overview==
==Overview==
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==About this Structure==
==About this Structure==
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2OOT is a [http://en.wikipedia.org/wiki/Single_protein Single protein] structure of sequence from [http://en.wikipedia.org/wiki/Homo_sapiens Homo sapiens] with <scene name='pdbligand=NAG:'>NAG</scene>, <scene name='pdbligand=ZN:'>ZN</scene>, <scene name='pdbligand=CA:'>CA</scene> and <scene name='pdbligand=CL:'>CL</scene> as [http://en.wikipedia.org/wiki/ligands ligands]. Active as [http://en.wikipedia.org/wiki/Glutamate_carboxypeptidase_II Glutamate carboxypeptidase II], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=3.4.17.21 3.4.17.21] Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2OOT OCA].
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2OOT is a [[Single protein]] structure of sequence from [http://en.wikipedia.org/wiki/Homo_sapiens Homo sapiens]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2OOT OCA].
==Reference==
==Reference==
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A high-resolution structure of ligand-free human glutamate carboxypeptidase II., Barinka C, Starkova J, Konvalinka J, Lubkowski J, Acta Crystallogr Sect F Struct Biol Cryst Commun. 2007 Mar 1;63(Pt, 3):150-3. Epub 2007 Feb 13. PMID:[http://ispc.weizmann.ac.il//pmbin/getpm?pmid=17329803 17329803]
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A high-resolution structure of ligand-free human glutamate carboxypeptidase II., Barinka C, Starkova J, Konvalinka J, Lubkowski J, Acta Crystallogr Sect F Struct Biol Cryst Commun. 2007 Mar 1;63(Pt, 3):150-3. Epub 2007 Feb 13. PMID:[http://www.ncbi.nlm.nih.gov/pubmed/17329803 17329803]
[[Category: Glutamate carboxypeptidase II]]
[[Category: Glutamate carboxypeptidase II]]
[[Category: Homo sapiens]]
[[Category: Homo sapiens]]
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[[Category: prostate-specific membrane antigen]]
[[Category: prostate-specific membrane antigen]]
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''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Thu Feb 21 18:20:57 2008''
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''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Thu Mar 20 18:02:30 2008''

Revision as of 16:02, 20 March 2008

Image:2oot.gif


PDB ID 2oot

Drag the structure with the mouse to rotate
, resolution 1.64Å
Ligands: , , and
Gene: FOLH1, FOLH, NAALAD1, PSM, PSMA (Homo sapiens)
Activity: Glutamate carboxypeptidase II, with EC number 3.4.17.21
Coordinates: save as pdb, mmCIF, xml



A High Resolution Structure of Ligand-free Human Glutamate Carboxypeptidase II


Contents

Overview

Human glutamate carboxypeptidase II (GCPII; EC 3.4.17.21) is an established marker for prostate-cancer diagnosis as well as a candidate therapeutic target for the treatment of diverse pathologies that involve glutamatergic transmission. Structural data on GCPII are thus valuable for the design and optimization of GCPII-specific inhibitors and diagnostic probes. The currently available structure of ligand-free GCPII was refined to a resolution of 3.5 A. This work reports the structure of the protein refined to 1.65 A resolution, with crystallographic values of R = 0.207 and R(free) = 0.228. The new structure extends the resolution appreciably and the new model based on this data shows significant differences when compared with the previously published model.

Disease

Known diseases associated with this structure: Myocardial infarcation, susceptibility to OMIM:[602855]

About this Structure

2OOT is a Single protein structure of sequence from Homo sapiens. Full crystallographic information is available from OCA.

Reference

A high-resolution structure of ligand-free human glutamate carboxypeptidase II., Barinka C, Starkova J, Konvalinka J, Lubkowski J, Acta Crystallogr Sect F Struct Biol Cryst Commun. 2007 Mar 1;63(Pt, 3):150-3. Epub 2007 Feb 13. PMID:17329803

Page seeded by OCA on Thu Mar 20 18:02:30 2008

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