User:Alice Harmon/Notes
From Proteopedia
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[[3kdh]], [[3kaz]], [[3kl1]] apo AtPYL2<br> | [[3kdh]], [[3kaz]], [[3kl1]] apo AtPYL2<br> | ||
[[3klx]], apo ATPYL3<br> | [[3klx]], apo ATPYL3<br> | ||
| - | [[ | + | [[4jdl]], Apo PYL5<br> |
| - | [[ | + | [[3rt2]], [[3uqh]] apo PYL10<br> |
'''Structures with (+)-ABA'''<br> | '''Structures with (+)-ABA'''<br> | ||
| - | [[ | + | [[3k90]], PYR1.ABA<br> |
[[3k3k]], AtPyr1 dimer, one monomer is bound to ABA and the other unliganded<br> | [[3k3k]], AtPyr1 dimer, one monomer is bound to ABA and the other unliganded<br> | ||
[[3jrs]], AtPYL1.ABA<br> | [[3jrs]], AtPYL1.ABA<br> | ||
[[3kdi]], [[3kb0]] AtPYL2.ABA<br> | [[3kdi]], [[3kb0]] AtPYL2.ABA<br> | ||
[[4dsb]], [[4dsc]] AtPYL3 with ABA<br> | [[4dsb]], [[4dsc]] AtPYL3 with ABA<br> | ||
| - | [[ | + | [[3oqu]], PYL9.ABA<br> |
| - | [[ | + | [[3r6p]], PYL10.ABA<br> |
'''Structures with (-)-ABA'''<br> | '''Structures with (-)-ABA'''<br> | ||
| - | [[ | + | [[4jda]], PYL3 with (-)-ABA<br> |
'''Structures with pyrabactin'''<br> | '''Structures with pyrabactin'''<br> | ||
| - | [[ | + | [[3njo]], PYR1.Pyrabactin<br> |
| - | [[ | + | [[3nef]], [[3neg]], [[3nr4]] PYL1.pyrabactin<br> |
| - | [[ | + | [[3nj0]], [[3ns2]] PYL2.Pyrabactin<br> |
| - | [[ | + | [[3nj1]], PYL2 V114I mutant.Pyrabactin <br> |
[[3nmh]], AtPYL2 in complex with pyrabactin<br> | [[3nmh]], AtPYL2 in complex with pyrabactin<br> | ||
[[3nmp]], AtPYL2 mutant A93F in complex with pyrabactin<br> | [[3nmp]], AtPYL2 mutant A93F in complex with pyrabactin<br> | ||
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'''Structures with (+)-ABA or homolog and a PP2C'''<br> | '''Structures with (+)-ABA or homolog and a PP2C'''<br> | ||
| - | [[ | + | [[3qn1]], PYR1.ABA - HAB1<br> |
| - | [[ | + | [[3zvu]], PYR1 H60P mutant .ABA - HAB1<br> |
[[3kb3]], AtPYL1.ABA in complex with HAB1<br> | [[3kb3]], AtPYL1.ABA in complex with HAB1<br> | ||
[[3jrq]], [[3kdj]] AtPYL1.ABA in complex with ABI1<br> | [[3jrq]], [[3kdj]] AtPYL1.ABA in complex with ABI1<br> | ||
| - | [[ | + | [[3ujl]], PYL2.ABA - ABI2<br> |
| - | [[ | + | [[4lga]], [[4lgb]] PYL2.ABA mimic- HAB1<br> |
[[4ds8]], AtPYL3.ABA complex with HAB1 | [[4ds8]], AtPYL3.ABA complex with HAB1 | ||
| - | [[ | + | [[3rt0]], PYL10.ABA - HAB1<br> |
'''Structures with pyrabactin and a PP2C'''<br> | '''Structures with pyrabactin and a PP2C'''<br> | ||
| - | [[ | + | [[4la7]], [[4lg5]] PYL2.Quinabactin - HAB1<br> |
[[3nmn]], AtPYL1.pyrabactin in complex with ABI1<br> | [[3nmn]], AtPYL1.pyrabactin in complex with ABI1<br> | ||
[[3nmt]], AtPYL2 mutant A93F.pyrabactin in complex with type 2C protein phosphatase HAB1<br> | [[3nmt]], AtPYL2 mutant A93F.pyrabactin in complex with type 2C protein phosphatase HAB1<br> | ||
Revision as of 19:40, 4 October 2013
Contents |
Pages needed
edit calmodulin pages
edit Ca2+/Calmodulin dependent protein kinase page
Create CaM-binding motifs
also http://en.wikipedia.org/wiki/Calmodulin
see Proteopedia:Policy
For PYR-ABI1 page:
PP2C structures
1a6q – hPP2C
2iq1 – hPP2C κ
2p8e – hPP2C β
2cm1 – PP2C + Mn – Micobacterium tuberculosis
3d8k – PP2C – Toxoplasma gondii
3jrq, 3kdj, 3nmn – AtPP2C + Pyl1 – Arabidopsis thaliana
3nmt, 3kb3, 3nmv, 3ujl – AtPP2C + Pyl2
4ds8 – AtPP2C + Pyl3 + Mn
3rt0 – AtPP2C (mutant) + Pyl10
3qn1, 3zvu – AtPP2C + Pyr1
3ujg – AtPP2C + SNRK2
3ujk – AtPP2C
Pyr/PYL/RCAR structures
APO structures
3k3k, AtPyr1 dimer, one monomer is bound to ABA and the other unliganded
3kay, apo AtPYL1
3kdh, 3kaz, 3kl1 apo AtPYL2
3klx, apo ATPYL3
4jdl, Apo PYL5
3rt2, 3uqh apo PYL10
Structures with (+)-ABA
3k90, PYR1.ABA
3k3k, AtPyr1 dimer, one monomer is bound to ABA and the other unliganded
3jrs, AtPYL1.ABA
3kdi, 3kb0 AtPYL2.ABA
4dsb, 4dsc AtPYL3 with ABA
3oqu, PYL9.ABA
3r6p, PYL10.ABA
Structures with (-)-ABA
4jda, PYL3 with (-)-ABA
Structures with pyrabactin
3njo, PYR1.Pyrabactin
3nef, 3neg, 3nr4 PYL1.pyrabactin
3nj0, 3ns2 PYL2.Pyrabactin
3nj1, PYL2 V114I mutant.Pyrabactin
3nmh, AtPYL2 in complex with pyrabactin
3nmp, AtPYL2 mutant A93F in complex with pyrabactin
3oji, PYL3 with pyrabactin(?)
Structures with (+)-ABA or homolog and a PP2C
3qn1, PYR1.ABA - HAB1
3zvu, PYR1 H60P mutant .ABA - HAB1
3kb3, AtPYL1.ABA in complex with HAB1
3jrq, 3kdj AtPYL1.ABA in complex with ABI1
3ujl, PYL2.ABA - ABI2
4lga, 4lgb PYL2.ABA mimic- HAB1
4ds8, AtPYL3.ABA complex with HAB1
3rt0, PYL10.ABA - HAB1
Structures with pyrabactin and a PP2C
4la7, 4lg5 PYL2.Quinabactin - HAB1
3nmn, AtPYL1.pyrabactin in complex with ABI1
3nmt, AtPYL2 mutant A93F.pyrabactin in complex with type 2C protein phosphatase HAB1
3nmv, AtPYL2 mutant A93F.pyrabactin in complex with type 2C protein phosphatase ABI1
add link to kinase domain page on
PKA pages
Goodsells PKA article on PDB website
Editing issues
HTML tags don't work inside scene tags:
superscript works fine here: Ca2+-bound CAD
but not here:
|
In the green tag, the tag Ca<sup>2+</sup> and the text before it are not rendered.
headings that are in scrollable sections are not included in the the page index
Can load scene using a different structure into a frame, but can't change the caption of the frame.
ABA signaling
Clearest picture of Pyr1 gate - latch is in Annu Reviews article
unused:
