Sandbox Reserved 802

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{{User:Hanna_Tims/Template_CHEM_410}}
{{User:Hanna_Tims/Template_CHEM_410}}
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<Structure load='1WA3' size='500' frame='true' align='right' caption='Aldolase' scene='Insert optional scene name here' />
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<Structure load='3dfo' size='500' frame='true' align='right' caption='Aldolase' scene='Insert optional scene name here' />
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The <scene name='56/563214/Trial_1/1'>secondary structure</scene> of aldolase can be observed in this diagram. Notice that the molecule consists primarily of alpha helices that are intertwined with beta sheets.
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The <scene name='56/563214/Aldolase/1'>tertiary structure</scene> of Fructose Biphosphate Aldolase can be observed. Aldolase is an enzyme that is active during glycolysis in order to produce cellular energy (ATP). Specifically, aldolase catalyzes an aldol cleavage reaction that hydrolyzes fructose 1,6-bisphosphate. It is a tetrameter (four subunits)composed of alpha helices and beta sheet (<scene name='56/563214/A2_-_helices_and_sheets/1'>secondary structure</scene>). Please note that alpha helices are observed in blue, and beta sheets are in yellow. The majority of the helices are located on the surface (outside) of the enzyme, where as most of the sheets are found in the interior. Most likely, polar amino acids are located on the peripheral helices, while hydrophobic or paired-polar amino acids are found within the beta sheet.
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The <scene name='56/563214/Colors/1'>alpha helices and beta sheets</scene> are clearly seen in this image. Alpha helices are blue in color, while the beta sheets are yellow. Notice there is a larger majority of alpha helices compared to the beta sheets, and most of the sheets are seemingly observed inside of the molecule.
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Revision as of 17:42, 12 October 2013

This Sandbox is Reserved from Oct 10, 2013, through May 20, 2014 for use in the course "CHEM 410 Biochemistry 1 and 2" taught by Hanna Tims at the Messiah College. This reservation includes Sandbox Reserved 780 through Sandbox Reserved 807.
To get started:
  • Click the edit this page tab at the top. Save the page after each step, then edit it again.
  • Click the 3D button (when editing, above the wikitext box) to insert Jmol.
  • show the Scene authoring tools, create a molecular scene, and save it. Copy the green link into the page.
  • Add a description of your scene. Use the buttons above the wikitext box for bold, italics, links, headlines, etc.

More help: Help:Editing

Aldolase

Drag the structure with the mouse to rotate

The of Fructose Biphosphate Aldolase can be observed. Aldolase is an enzyme that is active during glycolysis in order to produce cellular energy (ATP). Specifically, aldolase catalyzes an aldol cleavage reaction that hydrolyzes fructose 1,6-bisphosphate. It is a tetrameter (four subunits)composed of alpha helices and beta sheet (). Please note that alpha helices are observed in blue, and beta sheets are in yellow. The majority of the helices are located on the surface (outside) of the enzyme, where as most of the sheets are found in the interior. Most likely, polar amino acids are located on the peripheral helices, while hydrophobic or paired-polar amino acids are found within the beta sheet.

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