2p51
From Proteopedia
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| - | [[Image:2p51.gif|left|200px]] | + | [[Image:2p51.gif|left|200px]] |
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| - | '''Crystal structure of the S. pombe Pop2p deadenylation subunit''' | + | {{Structure |
| + | |PDB= 2p51 |SIZE=350|CAPTION= <scene name='initialview01'>2p51</scene>, resolution 1.40Å | ||
| + | |SITE= | ||
| + | |LIGAND= <scene name='pdbligand=MG:MAGNESIUM ION'>MG</scene> | ||
| + | |ACTIVITY= | ||
| + | |GENE= SPCC18.06c (caf1 homologue) ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=4896 Schizosaccharomyces pombe]) | ||
| + | }} | ||
| + | |||
| + | '''Crystal structure of the S. pombe Pop2p deadenylation subunit''' | ||
| + | |||
==Overview== | ==Overview== | ||
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==About this Structure== | ==About this Structure== | ||
| - | 2P51 is a [ | + | 2P51 is a [[Single protein]] structure of sequence from [http://en.wikipedia.org/wiki/Schizosaccharomyces_pombe Schizosaccharomyces pombe]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2P51 OCA]. |
==Reference== | ==Reference== | ||
| - | The 1.4-A crystal structure of the S. pombe Pop2p deadenylase subunit unveils the configuration of an active enzyme., Jonstrup AT, Andersen KR, Van LB, Brodersen DE, Nucleic Acids Res. 2007;35(9):3153-64. Epub 2007 Apr 22. PMID:[http:// | + | The 1.4-A crystal structure of the S. pombe Pop2p deadenylase subunit unveils the configuration of an active enzyme., Jonstrup AT, Andersen KR, Van LB, Brodersen DE, Nucleic Acids Res. 2007;35(9):3153-64. Epub 2007 Apr 22. PMID:[http://www.ncbi.nlm.nih.gov/pubmed/17452359 17452359] |
[[Category: Schizosaccharomyces pombe]] | [[Category: Schizosaccharomyces pombe]] | ||
[[Category: Single protein]] | [[Category: Single protein]] | ||
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[[Category: dedd nuclease fold]] | [[Category: dedd nuclease fold]] | ||
| - | ''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Thu | + | ''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Thu Mar 20 18:08:42 2008'' |
Revision as of 16:08, 20 March 2008
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| , resolution 1.40Å | |||||||
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| Ligands: | |||||||
| Gene: | SPCC18.06c (caf1 homologue) (Schizosaccharomyces pombe) | ||||||
| Coordinates: | save as pdb, mmCIF, xml | ||||||
Crystal structure of the S. pombe Pop2p deadenylation subunit
Overview
Deadenylation is the first and probably also rate-limiting step of controlled mRNA decay in eukaryotes and therefore central for the overall rate of gene expression. In yeast, the process is maintained by the mega-Dalton Ccr4-Not complex, of which both the Ccr4p and Pop2p subunits are 3'-5' exonucleases potentially responsible for the deadenylation reaction. Here, we present the crystal structure of the Pop2p subunit from Schizosaccharomyces pombe determined to 1.4 A resolution and show that the enzyme is a competent ribonuclease with a tunable specificity towards poly-A. In contrast to S. cerevisiae Pop2p, the S. pombe enzyme contains a fully conserved DEDDh active site, and the high resolution allows for a detailed analysis of its configuration, including divalent metal ion binding. Functional data further indicates that the identity of the ions in the active site can modulate both activity and specificity of the enzyme, and finally structural superposition of single nucleotides and poly-A oligonucleotides provide insight into the catalytic cycle of the protein.
About this Structure
2P51 is a Single protein structure of sequence from Schizosaccharomyces pombe. Full crystallographic information is available from OCA.
Reference
The 1.4-A crystal structure of the S. pombe Pop2p deadenylase subunit unveils the configuration of an active enzyme., Jonstrup AT, Andersen KR, Van LB, Brodersen DE, Nucleic Acids Res. 2007;35(9):3153-64. Epub 2007 Apr 22. PMID:17452359
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