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Sandbox Reserved 784

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It has three <scene name='56/563196/Domains/2'>domains</scene>. <scene name='56/563196/Domains_1/1'>Domain 1</scene> consists of an alpha-beta-alpha 3-layer sandwich. <scene name='56/563196/Domains_2/1'>Domain 2</scene> consists of a parallel alpha-beta barrel. <scene name='56/563196/Domains_3/1'>Domain 3</scene> consists of an anti-parallel beta-barrel.
It has three <scene name='56/563196/Domains/2'>domains</scene>. <scene name='56/563196/Domains_1/1'>Domain 1</scene> consists of an alpha-beta-alpha 3-layer sandwich. <scene name='56/563196/Domains_2/1'>Domain 2</scene> consists of a parallel alpha-beta barrel. <scene name='56/563196/Domains_3/1'>Domain 3</scene> consists of an anti-parallel beta-barrel.
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Hydrogen bonds and disulfide bonds
 
<scene name='56/563196/Domains_h_bonds/1'>Hydrogen bonds</scene> in the backbone show the interactions within the elements of secondary structure.
<scene name='56/563196/Domains_h_bonds/1'>Hydrogen bonds</scene> in the backbone show the interactions within the elements of secondary structure.
Hydrophobic and hydrophilic residues
Hydrophobic and hydrophilic residues
 +
<scene name='56/563196/Hydrophobics/1'>only hydrophobics</scene>
 +
<scene name='56/563196/Charged/1'>Charged and polar</scene>
 +
Solvent
Solvent
 +
<scene name='56/563196/Waters/1'>waters</scene>
The ligands, substrate, cofactors, etc
The ligands, substrate, cofactors, etc
 +
<scene name='56/563196/Interactions/1'>ligand interactions</scene>
 +
What kinds of side chains?
 +
Ligand contacts
Ligand contacts
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catalytic residues
+
 
 +
Catalytic residues

Revision as of 01:56, 18 October 2013

This Sandbox is Reserved from Oct 10, 2013, through May 20, 2014 for use in the course "CHEM 410 Biochemistry 1 and 2" taught by Hanna Tims at the Messiah College. This reservation includes Sandbox Reserved 780 through Sandbox Reserved 807.
To get started:
  • Click the edit this page tab at the top. Save the page after each step, then edit it again.
  • Click the 3D button (when editing, above the wikitext box) to insert Jmol.
  • show the Scene authoring tools, create a molecular scene, and save it. Copy the green link into the page.
  • Add a description of your scene. Use the buttons above the wikitext box for bold, italics, links, headlines, etc.

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pyruvate kinase

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Introduction

Pyruvate kinase (aka transferase, PDB 4IP7) What's it do Research about it

Structure

Pyruvate kinase is a , meaning it has four identical . This enzyme contains both and .

It has three . consists of an alpha-beta-alpha 3-layer sandwich. consists of a parallel alpha-beta barrel. consists of an anti-parallel beta-barrel.

in the backbone show the interactions within the elements of secondary structure.

Hydrophobic and hydrophilic residues


Solvent

The ligands, substrate, cofactors, etc What kinds of side chains?


Ligand contacts


Catalytic residues

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