Ribosomal protein S15
From Proteopedia
(Difference between revisions)
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[[3ulw]], [[4iyl]] – RPS15 – ''Campylobacter jejuni''<br /> | [[3ulw]], [[4iyl]] – RPS15 – ''Campylobacter jejuni''<br /> | ||
[[4a5u]] – EcRPS15 + RNA replicase polyprotein | [[4a5u]] – EcRPS15 + RNA replicase polyprotein | ||
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| - | === S15 in small ribosomal subunit === | ||
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| - | [[2zm6]], [[1n36]], [[1j5e]], [[3oto]]- TtRPS15 in 30S ribosomal subunit+THX+16S RRNA <br /> | ||
| - | [[2vqe]], [[2vqf]], [[2uuc]], [[2e5l]], [[2uu9]], [[2uua]], [[2uub]], [[3pyn]], [[3pyq]], [[3pys]], [[3pyu]] - TtRPS15 in 30S ribosomal subunit+16S RRNA+RNA fragment<br /> | ||
| - | [[3i8g]], [[3i8h]] - TtRPS15 in 30S ribosomal subunit+16S RRNA+mRNA+tRNA-Phe<br /> | ||
| - | [[3kc4]] – EcRPS15 in 30S ribosomal subunit <br /> | ||
| - | [[3i1m]], [[3i1o]], [[3df1]], [[3df3]], [[2vho]], [[2vhp]], [[2avy]], [[2aw7]], [[1pnx]], [[3ofo]], [[3ofp]], [[3or9]], [[3ora]], [[3kc4]] - EcRPS15 in 30S ribosomal subunit+16S RRNA<br /> | ||
| - | [[1i94]], [[1fka]], [[3uxs]], [[3uxt]], [[4dr1]] - TtRPS15 in 30S ribosomal subunit+16S RRNA<br /> | ||
| - | [[4duy]], [[4duz]], [[4dv0]], [[4dv1]], [[4dv2]], [[4dv3]], [[4dv4]], [[4dv5]], [[4dv6]], [[4dv7]] - TtRPS15 in 30S ribosomal subunit+16S RRNA (mutant)<br />[[4dr4]], [[4b3m]], [[4b3r]], [[4b3s]], [[4b3t]] – TtRPS15 in 30S ribosomal subunit+16S RRNA + mRNA<br /> | ||
| - | [[1p87]], [[1p6g]] - EcRPS15 in 30S ribosomal subunit+16S RRNA – Cryo-EM<br /> | ||
| - | [[3bbn]] - RPS15 in 30S ribosomal subunit+16S RRNA – Cryo-EM – spinach<br /> | ||
| - | [[2zkq]] – RPS15 in 40S ribosomal subunit+18S RRNA - dog<br /> | ||
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| - | === S15 in small + large ribosomal subunit === | ||
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| - | [[1ml5]], [[1eg0]] - EcRPS15 in 30S ribosomal subunit+50S ribosomal subunit+THX+chain release factor 2+P-site tRNA+tRNA Phe+mRNA fragment+23S RRNA+5S RRNA+16S RRNA - EM<br /> | ||
| - | [[3j0l]], [[3j0o]], [[3j0p]], [[3j0q]] - RPS15 in 30S ribosomal subunit+50S ribosomal subunit+ RRNA fragments +mRNA fragment+ tRNA – rabbit - Cryo EM | ||
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| - | === S15 in small ribosomal subunit+ chain release factor (RF)=== | ||
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| - | [[3mr8]], [[3ms0]] – TtRPS15 in 30S ribosomal subunit+THX+chain release factor 1+P-site tRNA+mRNA+16S RRNA <br /> | ||
| - | [[3d5a]], [[3d5c]], [[3f1e]], [[3f1g]] - TtRPS15 in 30S ribosomal subunit+THX+chain release factor 1+P-site tRNA+E-site tRNA+mRNA +16S RRNA<br /> | ||
| - | [[3zvo]] – TtRPS15 in 30S ribosomal subunit+THX+P-site tRNA Met +mRNA +16S RRNA+chain release factor 3<br /> | ||
| - | [[2b64]] - TtRPS15 in 30S ribosomal subunit+THX+P-site tRNA Phe+E-site tRNA Phe+mRNA +16S RRNA+chain release factor 1<br /> | ||
| - | [[2b9m]] - TtRPS15 in 30S ribosomal subunit+THX+P-site tRNA Phe+E-site tRNA Phe+mRNA +16S RRNA+chain release factor 2<br /> | ||
| - | [[2x9r]], [[2x9t]], [[2wh1]], [[2wh3]] - TtRPS15 in 30S ribosomal subunit+THX+chain release factor 2+P-site tRNA+mRNA +16S RRNA<br /> | ||
| - | [[3f1e]], [[3f1g]] - TtRPS15 in 30S ribosomal subunit+THX+chain release factor 2+P-site tRNA+E-site tRNA +16S RRNA<br /> | ||
| - | [[3uoq]] - EcRPS15 + 16S RRNA + mRNA + peptide chain release factor<br /> | ||
| - | [[4kfh]], [[4kfk]] - TtRPS15 in 30S ribosomal subunit+16S RRNA+ RF-2 + mRNA+ P-site tRNA fMet<br /> | ||
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| - | === S15 in small ribosomal subunit+tRNA+mRNA === | ||
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| - | [[2hgi]] - TtRPS15 in 30S ribosomal subunit+16S RRNA+tRNA Phe+tRNA fMet<br /> | ||
| - | [[4l6k]], [[4l6m]] - TtRPS15 in 30S ribosomal subunit+16S RRNA+tRNA Phe+tRNA<br /> | ||
| - | [[2hgp]] - TtRPS15 in 30S ribosomal subunit+16S RRNA+tRNA Phe+mRNA<br /> | ||
| - | [[3t1h]], [[3t1y]] - TtRPS15 in 30S ribosomal subunit+16S RRNA+tRNA Lys +mRNA<br /> | ||
| - | [[3tvf]], [[3tvg]], [[3uyd]], [[3uyf]] - TtRPS15 in 30S ribosomal subunit+16S RRNA+tRNA Leu + tRNA fMet + mRNA<br /> | ||
| - | [[3zn7]], [[3znd]] - TtRPS15 in 30S ribosomal subunit+16S RRNA+A-site tRNA Ile agmatidine + E-site tRNA Ile agmatidine + mRNA<br /> | ||
| - | [[3uz6]], [[3uz7]], [[3uzg]], [[3uzi]] - TtRPS15 in 30S ribosomal subunit+16S RRNA+tRNA Tyr + tRNA fMet + mRNA<br /> | ||
| - | [[2i2p]], [[2i2u]] - EcRPS15 in 30S ribosomal subunit+16S RRNA+tRNA Phe+mRNA<br /> | ||
| - | [[2hgr]], [[3v6u]], [[3v6v]], [[4ej9]], [[4eja]] - TtRPS15 in 30S ribosomal subunit+16S RRNA+tRNA Phe+tRNA fMet+mRNA<br /> | ||
| - | [[1yl4]] – TtRPS15 in 30S ribosomal subunit+ tRNA Phe+16S RRNA+THRS mRNA operator<br /> | ||
| - | [[1pns]] - EcRPS15 in 30S ribosomal subunit+ tRNA Phe+16S RRNA+mRNA <br /> | ||
| - | [[3j0u]], [[3j0v]], [[3j0x]], [[3j0z]], [[3j10]], [[3j20]] – EcRPS15 in 30S ribosomal subunit+ A-site tRNA + P-site tRNA +16S RRNA+mRNA – Cryo-EM<br /> | ||
| - | [[3j13]] – EcRPS15 in 30S ribosomal subunit+ P-site tRNA +16S RRNA+mRNA – Cryo-EM<br /> | ||
| - | [[1xnq]], [[1xnr]] - TtRPS15 in 30S ribosomal subunit+THX+mRNA+tRNA anticodon+16S RRNA<br /> | ||
| - | [[4gkj]], [[4gkk]] - TtRPS15 in 30S ribosomal subunit +16S RRNA +THX + mRNA + tRNA Met<br /> | ||
| - | [[4jv5]], [[4jya]], [[4k0k]], [[4k0l]] - TtRPS15 in 30S ribosomal subunit +16S RRNA +THX + mRNA + ASL-tRNA <br /> | ||
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| - | === S15 in small ribosomal subunit+A-site tRNA === | ||
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| - | [[2uxd]], [[2uxc]] - TtRPS15 in 30S ribosomal subunit+THX+A-site mRNA CGGG+tRNA anticodon+16S RRNA<br /> | ||
| - | [[1n32]], [[1n33]] - TtRPS15 in 30S ribosomal subunit+THX+A-site mRNA fragment+tRNA anticodon+16S RRNA<br /> | ||
| - | [[1n34]] - TtRPS15 in 30S ribosomal subunit+THX+A-site mRNA fragment +16S RRNA<br /> | ||
| - | [[1xmo]], [[1xmq]] - TtRPS15 in 30S ribosomal subunit+THX+A-site mRNA+tRNA anticodon+16S RRNA<br /> | ||
| - | [[2uxb]] - TtRPS15 in 30S ribosomal subunit+THX+A-site mRNA GGGU+tRNA anticodon+16S RRNA<br /> | ||
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| - | === S15 in small ribosomal subunit+P-site tRNA === | ||
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| - | [[3i8g]] - TtRPS15 in 30S ribosomal subunit+P-site tRNA+mRNA +16S RRNA<br /> | ||
| - | [[3i8h]], [[3i9b]], [[3i9d]] - TtRPS15 in 30S ribosomal subunit+THX+P-site tRNA+mRNA +16S RRNA<br /> | ||
| - | [[1ibk]] - TtRPS15 in 30S ribosomal subunit+THX+P-site mRNA fragment +16S RRNA<br /> | ||
| - | [[2wwl]] - EcRPS15 in 30S ribosomal subunit+Poly-Ala chain+P-site tRNA+mRNA +16S RRNA - ''Escherichia coli''<br /> | ||
| - | [[3i1q]] - EcRPS15 in 30S ribosomal subunit+P-site tRNA hairpin+mRNA<br /> | ||
| - | [[3i1s]], [[3i1z]], [[3i21]] - EcRPS15 in 30S ribosomal subunit+P-site tRNA hairpin+mRNA +16S RNA<br /> | ||
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| - | === S15 in small ribosomal subunit+A-site tRNA+P-site tRNA === | ||
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| - | [[1ibl]], [[1ibm]] - TtRPS15 in 30S ribosomal subunit+THX+A-site mRNA fragment+P-site mRNA fragment+tRNA anticodon+16S RRNA<br /> | ||
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| - | === S15 in small ribosomal subunit+P-site tRNA+E-site tRNA === | ||
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| - | [[2ow8]] - TtRPS15 in 30S ribosomal subunit+THX+P-site tRNA Phe+E-site tRNA+mRNA +16S RRNA<br /> | ||
| - | [[2b9o]] - TtRPS15 in 30S ribosomal subunit+THX+P-site tRNA Phe+E-site tRNA Phe+mRNA +16S RRNA<br /> | ||
| - | [[2qnh]] - TtRPS15 in 30S ribosomal subunit+THX+P-site tRNA+E-site tRNA+mRNA +16S RRNA<br /> | ||
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| - | === S15 in small ribosomal subunit+A-site tRNA+P-site tRNA+E-site tRNA === | ||
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| - | [[2gy9]], [[2gyb]] - EcRPS15 in 30S ribosomal subunit+P-site tRNA+A-site tRNA+E-site tRNA+mRNA +16S RRNA – Cryo-EM<br /> | ||
| - | [[1jgo]], [[1jgp]], [[1jgq]], [[1gix]] - TtRPS15 in 30S ribosomal subunit+P-site tRNA+A-site tRNA+E-site tRNA+tRNA Phe+mRNA +16S RRNA<br /> | ||
| - | [[4k0p]] - TtRPS15 in 30S ribosomal subunit+P-site tRNA+A-site tRNA+E-site tRNA +mRNA +16S RRNA<br /> | ||
| - | [[3e1a]], [[3e1c]] - EcRPS15 in 30S ribosomal subunit+P-site tRNA+A-site tRNA+E-site tRNA+mRNA +16S RRNA<br /> | ||
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| - | === S15 in small ribosomal subunit + antibiotics === | ||
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| - | [[1i95]], [[1i97]], [[2hhh]], [[2f4v]], [[3oge]], [[3ogy]], [[3ohc]], [[3ohd]], [[3ohy]], [[3oi0]], [[3oi2]], [[3oi4]], [[4dr2]], [[4dr3]] - TtRPS15 in 30S ribosomal subunit+16S RRNA+antibiotic<br /> | ||
| - | [[1hnw]], [[1hnx]], [[1hnz]], [[1fjg]], [[4aqy]], [[4dr5]], [[4dr6]], [[4dr7]], [[4khp]] - TtRPS15 in 30S ribosomal subunit+16S RRNA+mRNA fragment+antibiotic<br /> | ||
| - | [[2qbb]], [[2qb9]], [[1vs5]], [[1vs7]], [[2qan]], [[2qal]], [[2qou]], [[2qow]], [[2qoy]], [[2qp0]], [[2z4k]], [[2z4m]], [[3oaq]], [[3oar]], [[3ofa]], [[3ofb]], [[3ofo]], [[3ofp]], [[3ofx]], [[3ofy]] - EcRPS15 in 30S ribosomal subunit+16S RRNA+antibiotic<br /> | ||
| - | [[3sfs]] – EcRPS15 in 30S ribosomal subunit+16S RRNA+ mRNA + RF-3 + antibiotic<br /> | ||
| - | [[4gaq]], [[4gas]] – EcRPS15 in 30S ribosomal subunit+16S RRNA+ mRNA + antibiotic<br /> | ||
| - | [[2j00]], [[2j02]] - TtRPS15 in 30S ribosomal subunit+16S RRNA+paromomycin+P-site tRNA fMet+E-site tRNA Phe+mRNA<br /> | ||
| - | [[2wdg]], [[2wdh]], [[2wdk]], [[2wdm]] - TtRPS15 in 30S ribosomal subunit+THX+P-site tRNA+E-site tRNA+mRNA +16S RRNA+tRNA Phe+paromomycin<br /> | ||
| - | [[3knj]], [[3knh]], [[3knl]], [[3knn]] - TtRPS15 in 30S ribosomal subunit+P-site tRNA+A-site tRNA+E-site tRNA+mRNA +16S RRNA+ antibiotics<br /> | ||
| - | [[3uz3]], [[3uz4]] - TtRPS15 in 30S ribosomal subunit+16S RRNA+tRNA Leu + tRNA fMet + mRNA + paromomycin<br /> | ||
| - | [[4g5k]], [[4g5m]], [[4g5t]], [[4g5v]] - TtRPS15 in 30S ribosomal subunit+16S RRNA + tRNA fMet + mRNA + antibiotics<br /> | ||
| - | [[3uzl]], [[3uzm]] - TtRPS15 in 30S ribosomal subunit+16S RRNA+tRNA Tyr + tRNA fMet + mRNA + paromomycin | ||
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| - | === S15 in small ribosomal subunit + ribosome recycling factor === | ||
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| - | [[2qbd]], [[2qbf]] – EcRPS15 in 30S ribosomal subunit+16S RRNA+ribosome recycling factor<br /> | ||
| - | [[3r8n]], [[3r8o]], [[4gd1]], [[4gd2]] – EcRPS15 in 30S ribosomal subunit+16S RRNA+ribosome recycling factor + mRNA + tRNA<br /> | ||
| - | [[2qbh]], [[2qbj]] - EcRPS15 in 30S ribosomal subunit+16S RRNA+ribosome recycling factor+gentamicin<br /> | ||
| - | [[2v46]], [[2v48]] - TtRPS15 in 30S ribosomal subunit+16S RRNA+ribosome recycling factor+P-site tRNA Phe+mRNA+tRNA fMet<br /> | ||
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| - | === S15 in small ribosomal subunit + elongation factor (EF)=== | ||
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| - | [[2wri]], [[2wrk]] - TtRPS15 in 30S ribosomal subunit+THX+P-site tRNA+mRNA +16S RRNA+elongation factor G<br /> | ||
| - | [[2wrn]], [[2wrq]] - TtRPS15 in 30S ribosomal subunit+THX+A-site tRNA+mRNA +16S RRNA+elongation factor TU-4<br /> | ||
| - | [[3fic]] - TtRPS15 in 30S ribosomal subunit+THX+A-site tRNA+P-site tRNA+E-site tRNA+mRNA codon+16S RRNA+elongation factor TU-A<br /> | ||
| - | [[4abr]] - TtRPS15 in 30S ribosomal subunit+THX + E/P-site tRNA fMet +mRNA codon+16S RRNA+elongation factor TU<br /> | ||
| - | [[3izv]] – EcRPS15 in 30S ribosomal subunit+A/T-site tRNA Phe +16S RRNA+elongation factor TU<br /> | ||
| - | [[3j18]] - EcRPS15 in 30S ribosomal subunit+A/T-site tRNA Phe +16S RRNA+ mRNA + SSRA-binding protein + formyl-Met specific initiator tRNA + elongation factor G – Cryo-EM<br /> | ||
| - | [[3izw]] – EcRPS15 in 30S ribosomal subunit+A-site tRNA Phe +mRNA +16S RRNA+elongation factor TU<br /> | ||
| - | [[2y0u]], [[2y0w]], [[2y0y]], [[2y10]], [[2y12]], [[2y14]], [[2y16]], [[2y18]] - TtRPS15 in 30S subunit+THX+A-site tRNA+E-site tRMA+mRNA codon+16S RRNA+elongation factor TU<br /> | ||
| - | [[3fih]] - EcRPS15 in 30S ribosomal subunit+A-site tRNA Phe+P-site tRNA+mRNA +16S RRNA+elongation factor TU<br /> | ||
| - | [[3huw]], [[3huy]] - TtRPS15 in 30S ribosomal subunit+THX+tRNA-Met+mRNA +16S RRNA+elongation factor P<br /> | ||
| - | [[4b8f]], [[4b8h]] - TtRPS15 in 30S ribosomal subunit+THX+RNA+mRNA +16S RRNA+EF-G<br /> | ||
| - | [[4btc]], [[4kdg]], [[4kdj]] - TtRPS15 in 30S ribosomal subunit+THX+RNA +16S RRNA+EF-G<br /> | ||
| - | [[4juw]] - TtRPS15 in 30S ribosomal subunit+THX+ tRNA Phe +16S RRNA + mRNA +EF-G<br /> | ||
| - | [[4kbt]], [[4kbv]], [[4kcy]], [[4kd0]], [[4kd8]], [[4kda]] - TtRPS15 in 30S ribosomal subunit+THX+ tRNA Met +16S RRNA + mRNA + viomycin + EF-G<br /> | ||
| - | [[4kiy]], [[4kj0]], [[4kj2]], [[4kj4]], [[4kj6]], [[4kj8]], [[4kja]], [[4kjc]] - EcRPS15 in 30S ribosomal subunit +16S RRNA + viomycin + EF-G<br /> | ||
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| - | === S15 in small ribosomal subunit + translation initiation factor === | ||
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| - | [[1i96]] - TtRPS15 in 30S ribosomal subunit+THX+IF3+16S RRNA<br /> | ||
| - | [[1hr0]] - TtRPS15 in 30S ribosomal subunit+THX+IF+16S RRNA<br /> | ||
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| - | === S15 in small ribosomal subunit + various proteins === | ||
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| - | [[3kiq]], [[3kis]], [[3kiu]], [[3kix]] - TtRPS15 in 30S ribosomal subunit+toxin RelE+16S RRNA<br /> | ||
| - | [[4dh9]], [[4dhb]] - TtRPS15 in 30S ribosomal subunit +16S RRNA+mRNA+P-site tRNA fMet +THX + YAEJ<br /> | ||
| - | [[1voq]], [[1vos]], [[1vov]], [[1vox]], [[1voz]] - EcRPS15 in 30S ribosomal subunit+protein Y+16S RRNA<br /> | ||
| - | [[3j36]] - EcRPS15 in 30S ribosomal subunit+ tetracycline resistance protein +16S RRNA + mRNA + P-tRNA – Cryo-EM<br /> | ||
| - | [[2xfz]], [[2xg1]] - TtRPS15 in 30S ribosomal subunit+tRNA Phe+mRNA+colicin E3+16S RRNA<br /> | ||
| - | [[3jyv]] - RPS15+RPS0+RPS2+RPS3+RPS5+RPS9+RPS11+RPS13+RPS14+RPS16+RPS18+RPS20+RPS22+RPS23+RPS29+18S RRNA+RACK1+S19E+tRNA – Cryo-EM - ''Thermomyces lanuginosus''<br /> | ||
| - | [[3j00]] – EcRPS15 in 30S ribosomal subunit + 16S RRNA + mRNA + FTSQ + apolipoprotein A-I – Cryo EM<br /> | ||
| - | [[2ykr]] – EcRPS15 + 16S RRNA + GMPPNP + GTPase RSGA<br /> | ||
| - | [[4adv]] - EcRPS15 + 16S RRNA + methyltransferase – Cryo EM<br /> | ||
| - | [[3v22]], [[3v24]], [[3v26]], [[3v28]] – TtRPS12 in 30S ribosomal subunit +16S RRNA +THX + modulation factor<br /> | ||
| - | [[3v2c]], [[3v2e]] – TtRPS15 in 30S ribosomal subunit +16S RRNA +THX + ribosome-associated inhibitor<br /> | ||
| - | [[3iz6]] - RPS15 in 40S ribosomal subunit+RACK1 – wheat – Cryo EM <br /> | ||
| - | [[4a2i]] – EcRPS15 + 16S RRNA + GTPase RSGA – Cryo EM | ||
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| - | ===S15 in small 40S ribosomal subunit + various proteins=== | ||
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| - | [[3iz6]] - RPS15 in 40S ribosomal subunit +RACK1+18S RRNA – wheat – Cryo-EM<br /> | ||
| - | [[3izb]] - yRPS15 in 40S ribosomal subunit+ RACK1 – yeast - Cryo-EM<br /> | ||
| - | [[3u5c]], [[3u5g]] - yRPS15 in 40S ribosomal subunit+ RACK1 + suppressor protein SMT1<br /> | ||
| - | [[3o2z]], [[3o30]] - yRPS15 in 40S ribosomal subunit +RACK1<br /> | ||
| - | [[1s1h]] - yRPS15 in 40S ribosomal subunit+18S RRNA+EF-2 – Cryo-EM <br /> | ||
| - | [[3j38]] - RPS15 in 40S ribosomal subunit + EF-2 + guanine nucleotide-binding protein – ''Drosophila melanogaster'' – Cryo-EM<br /> | ||
| - | [[3j3a]] - RPS15 in 40S ribosomal subunit + EF-2 + guanine nucleotide-binding protein – human – Cryo-EM<br /> | ||
| - | [[4kzx]] - rRPS15 in 40S ribosomal subunit+ RACK1 + EIF1 – rabbit – Cryo-EM<br /> | ||
| - | [[4kzy]] - rRPS15 in 40S ribosomal subunit+ RACK1 + EIF1 + EIF1A – Cryo-EM<br /> | ||
| - | [[4kzz]] - rRPS15 in 40S ribosomal subunit+ RACK1 + EIF1A + initiator tRNA – Cryo-EM<br /> | ||
=== S15 in part of small ribosomal subunit === | === S15 in part of small ribosomal subunit === | ||
Revision as of 09:32, 27 April 2014
Ribosomal protein S15 (RPS15) is one of the 22 proteins which belong to the of the bacterial ribosome. It is involved in the early steps of ribosome assembly. The images at the left and at the right correspond to one representative RPS15, i.e. the crystal structure of Ribosomal protein S15 from Thermus thermophilus (2zm6, chain O).
Contents |
3D Structures of Ribosomal protein S15
Updated on 27-April-2014
S15
1a32 – RPS15 – Geobacillus stearothermophilus
1ab3, 2fkx - TtRPS15 – Thermus thermophilus - NMR
1kuq, 1f7y, 1dk1 - TtRPS15+16S RRNA fragment
2vaz – EcRPS15+RPSO mRNA operator – Escherichia coli – Cryo-EM
3ulw, 4iyl – RPS15 – Campylobacter jejuni
4a5u – EcRPS15 + RNA replicase polyprotein
S15 in part of small ribosomal subunit
3iy8 - EcRPS15+EcRPS5+EcRPS6+EcRPS9+EcRPS9 EcRPS8+EcRPS11+EcRPS12+EcRPS16+EcRPS17+EcRPS18+Leishmania taretolae mRNA
1g1x - TtRPS15+TtRPS6+TtRPS18+16S RRNA fragment
1qd7 – TtRPS15+TtRPS4+TtRPS5+TtRPS7+TtRPS8+TtRPS6+TtRPS17+TtRPS20+16S RRNA fragment
