3mkb

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{{STRUCTURE_3mkb| PDB=3mkb | SCENE= }}
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==Crystal structure determination of Shortfin Mako (Isurus oxyrinchus) hemoglobin at 1.9 Angstrom resolution==
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===Crystal structure determination of Shortfin Mako (Isurus oxyrinchus) hemoglobin at 1.9 Angstrom resolution===
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<StructureSection load='3mkb' size='340' side='right' caption='[[3mkb]], [[Resolution|resolution]] 1.90&Aring;' scene=''>
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{{ABSTRACT_PUBMED_24121325}}
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== Structural highlights ==
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<table><tr><td colspan='2'>[[3mkb]] is a 4 chain structure with sequence from [http://en.wikipedia.org/wiki/Isurus_oxyrinchus Isurus oxyrinchus]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3MKB OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=3MKB FirstGlance]. <br>
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</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=HEM:PROTOPORPHYRIN+IX+CONTAINING+FE'>HEM</scene></td></tr>
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<tr id='NonStdRes'><td class="sblockLbl"><b>[[Non-Standard_Residue|NonStd Res:]]</b></td><td class="sblockDat"><scene name='pdbligand=UNK:UNKNOWN'>UNK</scene></td></tr>
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<tr id='related'><td class="sblockLbl"><b>[[Related_structure|Related:]]</b></td><td class="sblockDat">[[1gcv|1gcv]], [[1gcw|1gcw]]</td></tr>
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<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=3mkb FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3mkb OCA], [http://www.rcsb.org/pdb/explore.do?structureId=3mkb RCSB], [http://www.ebi.ac.uk/pdbsum/3mkb PDBsum]</span></td></tr>
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</table>
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<div style="background-color:#fffaf0;">
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== Publication Abstract from PubMed ==
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Haemoglobin (Hb) is a tetrameric iron-containing protein that carries oxygen from the lungs to tissues and carbon dioxide from tissues back to the lungs. Pisces are the advanced aquatic vertebrates capable of surviving at wide depth ranges. The shortfin mako shark (SMS) is the pelagic, largest, fastest and most sophisticated species of the shark kingdom with well developed eyes. Mostly the pisces species are cold blooded in nature. Distinctly, the SMSs are warm-blooded animals with an advanced circulatory system. SMSs are capable of maintaining elevated muscle temperatures up to 33 K above the ambient water temperatures at a depth of 150-500 m. SMSs have a diverged air-breathing mechanism compared with other vertebrates. The haemoglobin molecule consists of four polypeptide chains, namely two alpha chains, each with 140 amino acids and two beta chains each having 136 amino acids. The SMS Hb was found to crystallize in monoclinic space group P21 using the hanging-drop vapour-diffusion method at room temperature. The crystal packing parameters for the SMS Hb structure contain one whole biological molecule in the asymmetric unit with a solvent content of 47%. The SMS Hb quaternary structural features interface-interface interactions and heme binding sites are discussed with different state Hbs and the results reveal that SMS Hb adopts an unliganded deoxy T state conformation.
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==About this Structure==
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Structural studies of haemoglobin from pisces species shortfin mako shark (Isurus oxyrinchus) at 1.9 A resolution.,Ramesh P, Sundaresan SS, Sathya Moorthy P, Balasubramanian M, Ponnuswamy MN J Synchrotron Radiat. 2013 Nov;20(Pt 6):843-7. doi: 10.1107/S0909049513021572., Epub 2013 Oct 1. PMID:24121325<ref>PMID:24121325</ref>
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[[3mkb]] is a 4 chain structure with sequence from [http://en.wikipedia.org/wiki/Isurus_oxyrinchus Isurus oxyrinchus]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3MKB OCA].
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From MEDLINE&reg;/PubMed&reg;, a database of the U.S. National Library of Medicine.<br>
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</div>
==See Also==
==See Also==
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*[[Hemoglobin|Hemoglobin]]
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*[[Hemoglobin 3D structures|Hemoglobin 3D structures]]
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== References ==
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==Reference==
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<references/>
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<ref group="xtra">PMID:024121325</ref><references group="xtra"/><references/>
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__TOC__
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</StructureSection>
[[Category: Isurus oxyrinchus]]
[[Category: Isurus oxyrinchus]]
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[[Category: Balasubramanian, M.]]
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[[Category: Balasubramanian, M]]
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[[Category: Moorthy, Pon Sathya.]]
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[[Category: Moorthy, Pon Sathya]]
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[[Category: Ponnuswamy, M N.]]
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[[Category: Ponnuswamy, M N]]
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[[Category: Ramesh, P.]]
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[[Category: Ramesh, P]]
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[[Category: Sundaresan, S S.]]
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[[Category: Sundaresan, S S]]
[[Category: Hemoglobin]]
[[Category: Hemoglobin]]
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[[Category: Isurus oxyrinchus]]
 
[[Category: Oxygen affinity]]
[[Category: Oxygen affinity]]
[[Category: Oxygen storage]]
[[Category: Oxygen storage]]
[[Category: Oxygen transport]]
[[Category: Oxygen transport]]
[[Category: Shortfin mako]]
[[Category: Shortfin mako]]

Revision as of 17:33, 18 December 2014

Crystal structure determination of Shortfin Mako (Isurus oxyrinchus) hemoglobin at 1.9 Angstrom resolution

3mkb, resolution 1.90Å

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