3af4

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{{STRUCTURE_3af4| PDB=3af4 | SCENE= }}
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==Pantothenate kinase from Mycobacterium tuberculosis (MtPanK) in complex with GMPPCP==
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===Pantothenate kinase from Mycobacterium tuberculosis (MtPanK) in complex with GMPPCP===
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<StructureSection load='3af4' size='340' side='right' caption='[[3af4]], [[Resolution|resolution]] 2.60&Aring;' scene=''>
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{{ABSTRACT_PUBMED_20451532}}
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== Structural highlights ==
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<table><tr><td colspan='2'>[[3af4]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/Mycobacterium_sp._h37rv Mycobacterium sp. h37rv]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3AF4 OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=3AF4 FirstGlance]. <br>
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</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=GCP:PHOSPHOMETHYLPHOSPHONIC+ACID+GUANYLATE+ESTER'>GCP</scene>, <scene name='pdbligand=GOL:GLYCEROL'>GOL</scene></td></tr>
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<tr id='related'><td class="sblockLbl"><b>[[Related_structure|Related:]]</b></td><td class="sblockDat">[[2zse|2zse]], [[2zs8|2zs8]], [[2zs9|2zs9]], [[2zsa|2zsa]], [[2zsb|2zsb]], [[2zsf|2zsf]], [[3aez|3aez]], [[3af0|3af0]], [[3af1|3af1]], [[3af2|3af2]], [[3af3|3af3]]</td></tr>
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<tr id='gene'><td class="sblockLbl"><b>[[Gene|Gene:]]</b></td><td class="sblockDat">coaA, Rv1092c ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=83332 Mycobacterium sp. H37Rv])</td></tr>
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<tr id='activity'><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[http://en.wikipedia.org/wiki/Pantothenate_kinase Pantothenate kinase], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=2.7.1.33 2.7.1.33] </span></td></tr>
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<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=3af4 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3af4 OCA], [http://www.rcsb.org/pdb/explore.do?structureId=3af4 RCSB], [http://www.ebi.ac.uk/pdbsum/3af4 PDBsum]</span></td></tr>
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</table>
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== Evolutionary Conservation ==
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[[Image:Consurf_key_small.gif|200px|right]]
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Check<jmol>
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<jmolCheckbox>
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<scriptWhenChecked>select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/af/3af4_consurf.spt"</scriptWhenChecked>
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<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
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<text>to colour the structure by Evolutionary Conservation</text>
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</jmolCheckbox>
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</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/chain_selection.php?pdb_ID=2ata ConSurf].
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<div style="clear:both"></div>
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<div style="background-color:#fffaf0;">
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== Publication Abstract from PubMed ==
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Kinetic measurements of enzyme activity indicate that type I pantothenate kinase from Mycobacterium tuberculosis has dual substrate specificity for ATP and GTP, unlike the enzyme from Escherichia coli, which shows a higher specificity for ATP. A molecular explanation for the difference in the specificities of the two homologous enzymes is provided by the crystal structures of the complexes of the M. tuberculosis enzyme with (1) GMPPCP and pantothenate, (2) GDP and phosphopantothenate, (3) GDP, (4) GDP and pantothenate, (5) AMPPCP, and (6) GMPPCP, reported here, and the structures of the complexes of the two enzymes involving coenzyme A and different adenyl nucleotides reported earlier. The explanation is substantially based on two critical substitutions in the amino acid sequence and the local conformational change resulting from them. The structures also provide a rationale for the movement of ligands during the action of the mycobacterial enzyme. Dual specificity of the type exhibited by this enzyme is rare. The change in locations of ligands during action, observed in the case of the M. tuberculosis enzyme, is unusual, so is the striking difference between two homologous enzymes in the geometry of the binding site, locations of ligands, and specificity. Furthermore, the dual specificity of the mycobacterial enzyme appears to have been caused by a biological necessity.
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==About this Structure==
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M. tuberculosis pantothenate kinase: dual substrate specificity and unusual changes in ligand locations.,Chetnani B, Kumar P, Surolia A, Vijayan M J Mol Biol. 2010 Jul 9;400(2):171-85. Epub 2010 May 6. PMID:20451532<ref>PMID:20451532</ref>
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[[3af4]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/Mycobacterium_sp._h37rv Mycobacterium sp. h37rv]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3AF4 OCA].
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From MEDLINE&reg;/PubMed&reg;, a database of the U.S. National Library of Medicine.<br>
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</div>
==See Also==
==See Also==
*[[Pantothenate kinase|Pantothenate kinase]]
*[[Pantothenate kinase|Pantothenate kinase]]
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== References ==
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==Reference==
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<references/>
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<ref group="xtra">PMID:020451532</ref><references group="xtra"/><references/>
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__TOC__
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</StructureSection>
[[Category: Mycobacterium sp. h37rv]]
[[Category: Mycobacterium sp. h37rv]]
[[Category: Pantothenate kinase]]
[[Category: Pantothenate kinase]]
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[[Category: Chetnani, B.]]
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[[Category: Chetnani, B]]
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[[Category: Kumar, P.]]
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[[Category: Kumar, P]]
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[[Category: Surolia, A.]]
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[[Category: Surolia, A]]
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[[Category: Vijayan, M.]]
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[[Category: Vijayan, M]]
[[Category: Atp-binding]]
[[Category: Atp-binding]]
[[Category: Coa biosynthesis]]
[[Category: Coa biosynthesis]]

Revision as of 08:46, 20 January 2015

Pantothenate kinase from Mycobacterium tuberculosis (MtPanK) in complex with GMPPCP

3af4, resolution 2.60Å

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