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3alt
From Proteopedia
(Difference between revisions)
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| - | + | ==Crystal structure of CEL-IV complexed with Melibiose== | |
| - | + | <StructureSection load='3alt' size='340' side='right' caption='[[3alt]], [[Resolution|resolution]] 2.50Å' scene=''> | |
| - | + | == Structural highlights == | |
| + | <table><tr><td colspan='2'>[[3alt]] is a 4 chain structure with sequence from [http://en.wikipedia.org/wiki/Cucumaria_echinata Cucumaria echinata]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3ALT OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=3ALT FirstGlance]. <br> | ||
| + | </td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=CA:CALCIUM+ION'>CA</scene>, <scene name='pdbligand=MLB:6-O-ALPHA-D-GALACTOPYRANOSYL-ALPHA-D-GLUCOPYRANOSE'>MLB</scene></td></tr> | ||
| + | <tr id='related'><td class="sblockLbl"><b>[[Related_structure|Related:]]</b></td><td class="sblockDat">[[3als|3als]], [[3alu|3alu]]</td></tr> | ||
| + | <tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=3alt FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3alt OCA], [http://www.rcsb.org/pdb/explore.do?structureId=3alt RCSB], [http://www.ebi.ac.uk/pdbsum/3alt PDBsum]</span></td></tr> | ||
| + | </table> | ||
| + | <div style="background-color:#fffaf0;"> | ||
| + | == Publication Abstract from PubMed == | ||
| + | CEL-IV is a C-type lectin isolated from a sea cucumber, Cucumaria echinata. This lectin is composed of four identical C-type carbohydrate-recognition domains (CRDs). X-ray crystallographic analysis of CEL-IV revealed that its tetrameric structure was stabilized by multiple interchain disulfide bonds among the subunits. Although CEL-IV has the EPN motif in its carbohydrate-binding sites, which is known to be characteristic of mannose-binding C-type CRDs, it showed preferential binding of galactose and N-acetylgalactosamine. Structural analyses of CEL-IV/melibiose and CEL-IV/raffinose complexes revealed that their galactose residues were recognized in an inverted orientation compared with mannose-binding C-type CRDs containing the EPN motif, by the aid of a stacking interaction with the side chain of Trp79. Changes in the environment of Trp79 induced by binding to galactose were detected by changes in the intrinsic fluorescence and UV-absorption spectra of WT CEL-IV and its site-directed mutants. The binding specificity of CEL-IV toward complex oligosaccharides was analyzed by frontal affinity chromatography using various pyridylamino-sugars, and the results indicated preferential binding to oligosaccharides containing Galbeta1-3/4(Fucalpha1-3/4)GlcNAc structures. These findings suggest that the specificity for oligosaccharides may be largely affected by interactions with amino acid residues in the binding site other than those determining the monosaccharide-specificity. | ||
| - | + | Galactose recognition by a tetrameric C-type lectin, CEL-IV, containing the EPN carbohydrate-recognition motif.,Hatakeyama T, Kamiya T, Kusunoki M, Nakamura-Tsuruta S, Hirabayashi J, Goda S, Unno H J Biol Chem. 2011 Jan 19. PMID:21247895<ref>PMID:21247895</ref> | |
| - | + | ||
| - | == | + | From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.<br> |
| - | + | </div> | |
| + | == References == | ||
| + | <references/> | ||
| + | __TOC__ | ||
| + | </StructureSection> | ||
[[Category: Cucumaria echinata]] | [[Category: Cucumaria echinata]] | ||
| - | [[Category: Goda, S | + | [[Category: Goda, S]] |
| - | [[Category: Hatakeyama, T | + | [[Category: Hatakeyama, T]] |
| - | [[Category: Hozawa, T | + | [[Category: Hozawa, T]] |
| - | [[Category: Ishii, K | + | [[Category: Ishii, K]] |
| - | [[Category: Kamiya, T | + | [[Category: Kamiya, T]] |
| - | [[Category: Kusunoki, M | + | [[Category: Kusunoki, M]] |
| - | [[Category: Unno, H | + | [[Category: Unno, H]] |
[[Category: C-type lectin]] | [[Category: C-type lectin]] | ||
[[Category: Cel-iv]] | [[Category: Cel-iv]] | ||
[[Category: Melibiose]] | [[Category: Melibiose]] | ||
[[Category: Sugar binding protein]] | [[Category: Sugar binding protein]] | ||
Revision as of 18:38, 21 December 2014
Crystal structure of CEL-IV complexed with Melibiose
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