This old version of Proteopedia is provided for student assignments while the new version is undergoing repairs. Content and edits done in this old version of Proteopedia after March 1, 2026 will eventually be lost when it is retired in about June of 2026.
Apply for new accounts at the new Proteopedia. Your logins will work in both the old and new versions.
4niv
From Proteopedia
(Difference between revisions)
| Line 1: | Line 1: | ||
| - | {{STRUCTURE_4niv| PDB=4niv | SCENE= }} | ||
| - | ===Crystal structure of trypsiligase (K60E/N143H/Y151H/D189K trypsin) trigonal form=== | ||
| - | {{ABSTRACT_PUBMED_24520050}} | ||
| - | == | + | ==Crystal structure of trypsiligase (K60E/N143H/Y151H/D189K trypsin) trigonal form== |
| - | [[4niv]] is a 1 chain structure. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=4NIV OCA]. | + | <StructureSection load='4niv' size='340' side='right' caption='[[4niv]], [[Resolution|resolution]] 1.00Å' scene=''> |
| + | == Structural highlights == | ||
| + | <table><tr><td colspan='2'>[[4niv]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/Bovin Bovin]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=4NIV OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=4NIV FirstGlance]. <br> | ||
| + | </td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=CA:CALCIUM+ION'>CA</scene>, <scene name='pdbligand=GOL:GLYCEROL'>GOL</scene></td></tr> | ||
| + | <tr id='related'><td class="sblockLbl"><b>[[Related_structure|Related:]]</b></td><td class="sblockDat">[[4niw|4niw]], [[4nix|4nix]], [[4niy|4niy]]</td></tr> | ||
| + | <tr id='activity'><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[http://en.wikipedia.org/wiki/Trypsin Trypsin], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=3.4.21.4 3.4.21.4] </span></td></tr> | ||
| + | <tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=4niv FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=4niv OCA], [http://pdbe.org/4niv PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=4niv RCSB], [http://www.ebi.ac.uk/pdbsum/4niv PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=4niv ProSAT]</span></td></tr> | ||
| + | </table> | ||
| + | <div style="background-color:#fffaf0;"> | ||
| + | == Publication Abstract from PubMed == | ||
| + | Although site-specific incorporation of artificial functionalities into proteins is an important tool in both basic and applied research, it can be a major challenge to protein chemists. Enzymatic protein modification is an attractive goal due to the inherent regio- and stereoselectivity of enzymes, yet their specificity remains a problem. As a result of the intrinsic reversibility of enzymatic reactions, proteinases can in principle catalyze ligation reactions. While this makes them attractive tools for site-specific protein bioconjugation, competing hydrolysis reactions limits their general use. Here we describe the design and application of a highly specific trypsin variant for the selective modification of N-terminal residues of diverse proteins with various reagents. The modification proceeds quantitatively under native (aqueous) conditions. We show that the variant has a disordered zymogen-like activation domain, effectively suppressing the hydrolysis reaction, which is converted to an active conformation in the presence of appropriate substrates. | ||
| - | + | N-Terminal Protein Modification by Substrate-Activated Reverse Proteolysis.,Liebscher S, Schopfel M, Aumuller T, Sharkhuukhen A, Pech A, Hoss E, Parthier C, Jahreis G, Stubbs MT, Bordusa F Angew Chem Int Ed Engl. 2014 Feb 12. doi: 10.1002/anie.201307736. PMID:24520050<ref>PMID:24520050</ref> | |
| - | <ref | + | |
| + | From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.<br> | ||
| + | </div> | ||
| + | <div class="pdbe-citations 4niv" style="background-color:#fffaf0;"></div> | ||
| + | |||
| + | ==See Also== | ||
| + | *[[Trypsin|Trypsin]] | ||
| + | == References == | ||
| + | <references/> | ||
| + | __TOC__ | ||
| + | </StructureSection> | ||
| + | [[Category: Bovin]] | ||
[[Category: Trypsin]] | [[Category: Trypsin]] | ||
| - | [[Category: Parthier, C | + | [[Category: Parthier, C]] |
| - | [[Category: Schoepfel, M | + | [[Category: Schoepfel, M]] |
| - | [[Category: Stubbs, M T | + | [[Category: Stubbs, M T]] |
[[Category: Activation domain]] | [[Category: Activation domain]] | ||
[[Category: Enzyme design]] | [[Category: Enzyme design]] | ||
| Line 18: | Line 36: | ||
[[Category: Reverse proteolysis]] | [[Category: Reverse proteolysis]] | ||
[[Category: Serine proteinase]] | [[Category: Serine proteinase]] | ||
| - | [[Category: Trypsin]] | ||
[[Category: Zymogen]] | [[Category: Zymogen]] | ||
Revision as of 15:47, 5 August 2016
Crystal structure of trypsiligase (K60E/N143H/Y151H/D189K trypsin) trigonal form
| |||||||||||
