4gn0
From Proteopedia
(Difference between revisions)
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| - | + | ==De novo phasing of a Hamp-complex using an improved Arcimboldo method== | |
| - | + | <StructureSection load='4gn0' size='340' side='right' caption='[[4gn0]], [[Resolution|resolution]] 1.75Å' scene=''> | |
| - | + | == Structural highlights == | |
| + | <table><tr><td colspan='2'>[[4gn0]] is a 4 chain structure with sequence from [http://en.wikipedia.org/wiki/Arcfu Arcfu]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=4GN0 OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=4GN0 FirstGlance]. <br> | ||
| + | </td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=MG:MAGNESIUM+ION'>MG</scene></td></tr> | ||
| + | <tr id='gene'><td class="sblockLbl"><b>[[Gene|Gene:]]</b></td><td class="sblockDat">AF_1503 ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=224325 ARCFU])</td></tr> | ||
| + | <tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=4gn0 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=4gn0 OCA], [http://www.rcsb.org/pdb/explore.do?structureId=4gn0 RCSB], [http://www.ebi.ac.uk/pdbsum/4gn0 PDBsum]</span></td></tr> | ||
| + | </table> | ||
| + | <div style="background-color:#fffaf0;"> | ||
| + | == Publication Abstract from PubMed == | ||
| + | We describe an algorithm for phasing protein crystal X-ray diffraction data that identifies, retrieves, refines and exploits general tertiary structural information from small fragments available in the Protein Data Bank. The algorithm successfully phased, through unspecific molecular replacement combined with density modification, all-helical, mixed alpha-beta, and all-beta protein structures. The method is available as a software implementation: Borges. | ||
| - | + | Exploiting tertiary structure through local folds for crystallographic phasing.,Sammito M, Millan C, Rodriguez DD, de Ilarduya IM, Meindl K, De Marino I, Petrillo G, Buey RM, de Pereda JM, Zeth K, Sheldrick GM, Uson I Nat Methods. 2013 Sep 15. doi: 10.1038/nmeth.2644. PMID:24037245<ref>PMID:24037245</ref> | |
| - | + | ||
| - | == | + | From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.<br> |
| - | + | </div> | |
| + | == References == | ||
| + | <references/> | ||
| + | __TOC__ | ||
| + | </StructureSection> | ||
[[Category: Arcfu]] | [[Category: Arcfu]] | ||
| - | [[Category: Bar, K | + | [[Category: Bar, K]] |
| - | [[Category: Hulko, M | + | [[Category: Hulko, M]] |
| - | [[Category: Lupas, A N | + | [[Category: Lupas, A N]] |
| - | [[Category: Martin, J | + | [[Category: Martin, J]] |
| - | [[Category: Ursinus, A | + | [[Category: Ursinus, A]] |
| - | [[Category: Zeth, K | + | [[Category: Zeth, K]] |
[[Category: Four helix bundle]] | [[Category: Four helix bundle]] | ||
[[Category: Hamp domain]] | [[Category: Hamp domain]] | ||
[[Category: Signaling protein]] | [[Category: Signaling protein]] | ||
[[Category: Transmembrane signalling]] | [[Category: Transmembrane signalling]] | ||
Revision as of 13:38, 4 January 2015
De novo phasing of a Hamp-complex using an improved Arcimboldo method
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