8adh
From Proteopedia
| Line 1: | Line 1: | ||
| - | [[Image:8adh.gif|left|200px]] | + | [[Image:8adh.gif|left|200px]] |
| - | + | ||
| - | '''INTERDOMAIN MOTION IN LIVER ALCOHOL DEHYDROGENASE. STRUCTURAL AND ENERGETIC ANALYSIS OF THE HINGE BENDING MODE''' | + | {{Structure |
| + | |PDB= 8adh |SIZE=350|CAPTION= <scene name='initialview01'>8adh</scene>, resolution 2.4Å | ||
| + | |SITE= | ||
| + | |LIGAND= <scene name='pdbligand=ZN:ZINC ION'>ZN</scene> | ||
| + | |ACTIVITY= [http://en.wikipedia.org/wiki/Alcohol_dehydrogenase_(acceptor) Alcohol dehydrogenase (acceptor)], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=1.1.99.8 1.1.99.8] | ||
| + | |GENE= | ||
| + | }} | ||
| + | |||
| + | '''INTERDOMAIN MOTION IN LIVER ALCOHOL DEHYDROGENASE. STRUCTURAL AND ENERGETIC ANALYSIS OF THE HINGE BENDING MODE''' | ||
| + | |||
==Overview== | ==Overview== | ||
| Line 7: | Line 16: | ||
==About this Structure== | ==About this Structure== | ||
| - | 8ADH is a [ | + | 8ADH is a [[Single protein]] structure of sequence from [http://en.wikipedia.org/wiki/Equus_caballus Equus caballus]. This structure supersedes the now removed PDB entries 4ADH and 3ADH. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=8ADH OCA]. |
==Reference== | ==Reference== | ||
| - | Interdomain motion in liver alcohol dehydrogenase. Structural and energetic analysis of the hinge bending mode., Colonna-Cesari F, Perahia D, Karplus M, Eklund H, Braden CI, Tapia O, J Biol Chem. 1986 Nov 15;261(32):15273-80. PMID:[http:// | + | Interdomain motion in liver alcohol dehydrogenase. Structural and energetic analysis of the hinge bending mode., Colonna-Cesari F, Perahia D, Karplus M, Eklund H, Braden CI, Tapia O, J Biol Chem. 1986 Nov 15;261(32):15273-80. PMID:[http://www.ncbi.nlm.nih.gov/pubmed/3771574 3771574] |
[[Category: Alcohol dehydrogenase (acceptor)]] | [[Category: Alcohol dehydrogenase (acceptor)]] | ||
[[Category: Equus caballus]] | [[Category: Equus caballus]] | ||
| Line 19: | Line 28: | ||
[[Category: oxidoreductase(nad(a)-choh(d))]] | [[Category: oxidoreductase(nad(a)-choh(d))]] | ||
| - | ''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Thu | + | ''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Thu Mar 20 19:15:16 2008'' |
Revision as of 17:15, 20 March 2008
| |||||||
| , resolution 2.4Å | |||||||
|---|---|---|---|---|---|---|---|
| Ligands: | |||||||
| Activity: | Alcohol dehydrogenase (acceptor), with EC number 1.1.99.8 | ||||||
| Coordinates: | save as pdb, mmCIF, xml | ||||||
INTERDOMAIN MOTION IN LIVER ALCOHOL DEHYDROGENASE. STRUCTURAL AND ENERGETIC ANALYSIS OF THE HINGE BENDING MODE
Overview
A study of the hinge bending mode in the enzyme liver alcohol dehydrogenase is made by use of empirical energy functions. The enzyme is a dimer, with each monomer composed of a coenzyme binding domain and a catalytic domain with a large cleft between the two. Superposition of the apoenzyme and holoenzyme crystal structures is used to determine a rigid rotation axis for closing of the cleft. It is shown that a rigid body transformation of the apoenzyme to the holoenzyme structure corresponds to a 10 degrees rotation of the catalytic domain about this axis. The rotation is not along the least-motion path for closing of the cleft but instead corresponds to the catalytic domain coming closer to the coenzyme binding domain by a sliding motion. Estimation of the energy associated with the interdomain motion of the apoenzyme over a range of 90 degrees (-40 to 50 degrees, where 0 degrees corresponds to the minimized crystal structure) demonstrates that local structural relaxation makes possible large-scale rotations with relatively small energy increments. A variety of structural rearrangements associated with the domain motion are characterized. They involve the hinge region residues that provide the covalent connections between the two domains and certain loop regions that are brought into contact by the rotation. Differences between the energy minimized and the holoenzyme structures point to the existence of alternative conformations for loops and to the importance of the ligands in the structural rearrangements.
About this Structure
8ADH is a Single protein structure of sequence from Equus caballus. This structure supersedes the now removed PDB entries 4ADH and 3ADH. Full crystallographic information is available from OCA.
Reference
Interdomain motion in liver alcohol dehydrogenase. Structural and energetic analysis of the hinge bending mode., Colonna-Cesari F, Perahia D, Karplus M, Eklund H, Braden CI, Tapia O, J Biol Chem. 1986 Nov 15;261(32):15273-80. PMID:3771574
Page seeded by OCA on Thu Mar 20 19:15:16 2008
