Highlighted Proteins of Lyme Disease

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[[Image: Cataly.png|300px|right|thumb|<b>Figure 6: Comparison of the Compositions of the OspB and a Serine Protease Catalytic Triads</b>]]
[[Image: Cataly.png|300px|right|thumb|<b>Figure 6: Comparison of the Compositions of the OspB and a Serine Protease Catalytic Triads</b>]]
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The mechanism by which CB2 and H6831 Fab fragments destroy a spirochete appears to be a novel interaction. It is possible that Fab binding changes the properties of OspB folding, which may increase sensitivity of the protein to proteolysis or aggregation. NMR methods have shown that the effects of binding can be sent to regions of the antigen distant from the epitope, which is at the <scene name='User:Olivia_Cheng/Sandbox_1/1p4p_rainbow/1'>C-terminus</scene> shown in red (N-terminus in blue). OspB shows signs of truncation after interacting with Fab of H6831 <ref>PMID: 1382591</ref>. Truncated OspBs cease within the two C-terminal beta-strands of the central sheet. H6831 disorders or removes a beta sheet from OspB after binding, and cleavage may be a possible explanation for the conformational changes of OspB.<ref>PMID: 7505260</ref> In <b>H6831-free</b> and <b>H6831-bound</b> forms of OspB, some changes result from proteolysis near the N-terminus.<sup>[15]</sup> Residues 157-201 on OspB contain the <b>cleaved region</b>, shown in pink.<ref>PMID: 15713683</ref>
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The mechanism by which CB2 and H6831 Fab fragments destroy a spirochete appears to be a novel interaction. It is possible that Fab binding changes the properties of OspB folding, which may increase sensitivity of the protein to proteolysis or aggregation. NMR methods have shown that the effects of binding can be sent to regions of the antigen distant from the epitope, which is at the <scene name='User:Olivia_Cheng/Sandbox_1/1p4p_rainbow/1'>C-terminus</scene> shown in red (N-terminus in blue). OspB shows signs of truncation after interacting with Fab of H6831 <ref>PMID: 1382591</ref>. Truncated OspBs cease within the two C-terminal beta-strands of the central sheet. H6831 disorders or removes a beta sheet from OspB after binding, and cleavage may be a possible explanation for the conformational changes of OspB.<ref>PMID: 7505260</ref>
It is quite possible that OspB performs an autoproteolysis. There is a set of <scene name='User:Olivia_Cheng/Sandbox_1/1p4p_cat_triad_cool/9'>three residues</scene> found on OspB that resembles the catalytic triad of [http://proteopedia.org/wiki/index.php/Serine_Proteases serine proteases]. This "constellation" consists of Thr166, Arg162, and Glu184 - similar to the catalytic triad residues of the serine protease [[trypsin]], which are Ser195, His57, and Asp102.<ref> PMID:12475199</ref> Threonine and Glutamic acid are found in other catalytic triads of the serine hydrolase family, but arginine seems unlikely to replace histidine as a base due to its higher pKa. There have been studies that have shown that arginine is essential for other enzymatic functions, such as in the Ser-Arg-Asp catalytic triad in cytosolic phospholipase A2 and as a catalytic base in Sortase A. <scene name='User:Olivia_Cheng/Sandbox_1/1p4p_asn164/1'>Asn164</scene> forms an hydrogen bond with <scene name='User:Olivia_Cheng/Sandbox_1/1p4p_asn164/2'>Thr166</scene> and may rearrange to form a putative oxyanion hole with Thr166 and another unidentified atom if active in the catalysis. A concerted proton transfer, similar to a “proton wire”, is one plausible mechanism that would allow arginine to function in the catalytic triad of a protease.
It is quite possible that OspB performs an autoproteolysis. There is a set of <scene name='User:Olivia_Cheng/Sandbox_1/1p4p_cat_triad_cool/9'>three residues</scene> found on OspB that resembles the catalytic triad of [http://proteopedia.org/wiki/index.php/Serine_Proteases serine proteases]. This "constellation" consists of Thr166, Arg162, and Glu184 - similar to the catalytic triad residues of the serine protease [[trypsin]], which are Ser195, His57, and Asp102.<ref> PMID:12475199</ref> Threonine and Glutamic acid are found in other catalytic triads of the serine hydrolase family, but arginine seems unlikely to replace histidine as a base due to its higher pKa. There have been studies that have shown that arginine is essential for other enzymatic functions, such as in the Ser-Arg-Asp catalytic triad in cytosolic phospholipase A2 and as a catalytic base in Sortase A. <scene name='User:Olivia_Cheng/Sandbox_1/1p4p_asn164/1'>Asn164</scene> forms an hydrogen bond with <scene name='User:Olivia_Cheng/Sandbox_1/1p4p_asn164/2'>Thr166</scene> and may rearrange to form a putative oxyanion hole with Thr166 and another unidentified atom if active in the catalysis. A concerted proton transfer, similar to a “proton wire”, is one plausible mechanism that would allow arginine to function in the catalytic triad of a protease.

Revision as of 15:34, 2 April 2014

PDB ID 1ggq

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Proteopedia Page Authors

Safa Abdelhakim, Frank J. Albergo, Irene Chen, Olivia Cheng, Rachel Cirineo, Jenny Kim Kim, Alexandros Konstantinidis, Cara Lin, Stephanie Maung, Christopher Morales, Andrea Mullen, Niamh B. O'Hara, Marvin H. O'Neal III, Philip J. Pipitone, Kimberly Slade, Christopher Smilios, Raymond Suhandynata, Khine Tun, Tanya Turkewitz, Ying Zhao, La Zhong, Jonathan Manit Wyrick.

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