2qfd

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[[Image:2qfd.jpg|left|200px]]<br /><applet load="2qfd" size="350" color="white" frame="true" align="right" spinBox="true"
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[[Image:2qfd.jpg|left|200px]]
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caption="2qfd, resolution 2.7&Aring;" />
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'''Crystal structure of the regulatory domain of human RIG-I with bound Hg'''<br />
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{{Structure
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|PDB= 2qfd |SIZE=350|CAPTION= <scene name='initialview01'>2qfd</scene>, resolution 2.7&Aring;
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|SITE= <scene name='pdbsite=AC1:Hg+Binding+Site+For+Residue+A+1001'>AC1</scene>, <scene name='pdbsite=AC2:Hg+Binding+Site+For+Residue+B+1002'>AC2</scene>, <scene name='pdbsite=AC3:Hg+Binding+Site+For+Residue+C+1003'>AC3</scene>, <scene name='pdbsite=AC4:Hg+Binding+Site+For+Residue+D+1004'>AC4</scene>, <scene name='pdbsite=AC5:Hg+Binding+Site+For+Residue+E+1005'>AC5</scene>, <scene name='pdbsite=AC6:Hg+Binding+Site+For+Residue+F+1006'>AC6</scene>, <scene name='pdbsite=AC7:Hg+Binding+Site+For+Residue+G+1007'>AC7</scene>, <scene name='pdbsite=AC8:Hg+Binding+Site+For+Residue+H+1008'>AC8</scene>, <scene name='pdbsite=AC9:Hg+Binding+Site+For+Residue+I+1009'>AC9</scene> and <scene name='pdbsite=BC1:Hg+Binding+Site+For+Residue+J+1010'>BC1</scene>
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|LIGAND= <scene name='pdbligand=HG:MERCURY (II) ION'>HG</scene>
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|ACTIVITY=
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|GENE= DDX58 ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=9606 Homo sapiens])
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}}
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'''Crystal structure of the regulatory domain of human RIG-I with bound Hg'''
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==Overview==
==Overview==
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==About this Structure==
==About this Structure==
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2QFD is a [http://en.wikipedia.org/wiki/Single_protein Single protein] structure of sequence from [http://en.wikipedia.org/wiki/Homo_sapiens Homo sapiens] with <scene name='pdbligand=HG:'>HG</scene> as [http://en.wikipedia.org/wiki/ligand ligand]. Known structural/functional Sites: <scene name='pdbsite=AC1:Hg+Binding+Site+For+Residue+A+1001'>AC1</scene>, <scene name='pdbsite=AC2:Hg+Binding+Site+For+Residue+B+1002'>AC2</scene>, <scene name='pdbsite=AC3:Hg+Binding+Site+For+Residue+C+1003'>AC3</scene>, <scene name='pdbsite=AC4:Hg+Binding+Site+For+Residue+D+1004'>AC4</scene>, <scene name='pdbsite=AC5:Hg+Binding+Site+For+Residue+E+1005'>AC5</scene>, <scene name='pdbsite=AC6:Hg+Binding+Site+For+Residue+F+1006'>AC6</scene>, <scene name='pdbsite=AC7:Hg+Binding+Site+For+Residue+G+1007'>AC7</scene>, <scene name='pdbsite=AC8:Hg+Binding+Site+For+Residue+H+1008'>AC8</scene>, <scene name='pdbsite=AC9:Hg+Binding+Site+For+Residue+I+1009'>AC9</scene> and <scene name='pdbsite=BC1:Hg+Binding+Site+For+Residue+J+1010'>BC1</scene>. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2QFD OCA].
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2QFD is a [[Single protein]] structure of sequence from [http://en.wikipedia.org/wiki/Homo_sapiens Homo sapiens]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2QFD OCA].
==Reference==
==Reference==
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The C-Terminal Regulatory Domain Is the RNA 5'-Triphosphate Sensor of RIG-I., Cui S, Eisenacher K, Kirchhofer A, Brzozka K, Lammens A, Lammens K, Fujita T, Conzelmann KK, Krug A, Hopfner KP, Mol Cell. 2008 Feb 1;29(2):169-179. PMID:[http://ispc.weizmann.ac.il//pmbin/getpm?pmid=18243112 18243112]
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The C-Terminal Regulatory Domain Is the RNA 5'-Triphosphate Sensor of RIG-I., Cui S, Eisenacher K, Kirchhofer A, Brzozka K, Lammens A, Lammens K, Fujita T, Conzelmann KK, Krug A, Hopfner KP, Mol Cell. 2008 Feb 1;29(2):169-179. PMID:[http://www.ncbi.nlm.nih.gov/pubmed/18243112 18243112]
[[Category: Homo sapiens]]
[[Category: Homo sapiens]]
[[Category: Single protein]]
[[Category: Single protein]]
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[[Category: zinc finger]]
[[Category: zinc finger]]
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''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Wed Feb 27 07:47:51 2008''
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''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Thu Mar 20 18:25:18 2008''

Revision as of 16:25, 20 March 2008

Image:2qfd.jpg


PDB ID 2qfd

Drag the structure with the mouse to rotate
, resolution 2.7Å
Sites: , , , , , , , , and
Ligands:
Gene: DDX58 (Homo sapiens)
Coordinates: save as pdb, mmCIF, xml



Crystal structure of the regulatory domain of human RIG-I with bound Hg


Overview

The ATPase RIG-I senses viral RNAs that contain 5'-triphosphates in the cytoplasm. It initiates a signaling cascade that activates innate immune response by interferon and cytokine production, providing essential antiviral protection for the host. The mode of RNA 5'-triphosphate sensing by RIG-I remains elusive. We show that the C-terminal regulatory domain RD of RIG-I binds viral RNA in a 5'-triphosphate-dependent manner and activates the RIG-I ATPase by RNA-dependent dimerization. The crystal structure of RD reveals a zinc-binding domain that is structurally related to GDP/GTP exchange factors of Rab-like GTPases. The zinc coordination site is essential for RIG-I signaling and is also conserved in MDA5 and LGP2, suggesting related RD domains in all three enzymes. Structure-guided mutagenesis identifies a positively charged groove as likely 5'-triphosphate-binding site of RIG-I. This groove is distinct in MDA5 and LGP2, raising the possibility that RD confers ligand specificity.

About this Structure

2QFD is a Single protein structure of sequence from Homo sapiens. Full crystallographic information is available from OCA.

Reference

The C-Terminal Regulatory Domain Is the RNA 5'-Triphosphate Sensor of RIG-I., Cui S, Eisenacher K, Kirchhofer A, Brzozka K, Lammens A, Lammens K, Fujita T, Conzelmann KK, Krug A, Hopfner KP, Mol Cell. 2008 Feb 1;29(2):169-179. PMID:18243112

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