3sfi

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{{STRUCTURE_3sfi| PDB=3sfi | SCENE= }}
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==Ethionamide Boosters Part 2: Combining Bioisosteric Replacement and Structure-Based Drug Design to Solve Pharmacokinetic Issues in a Series of Potent 1,2,4-Oxadiazole EthR Inhibitors.==
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===Ethionamide Boosters Part 2: Combining Bioisosteric Replacement and Structure-Based Drug Design to Solve Pharmacokinetic Issues in a Series of Potent 1,2,4-Oxadiazole EthR Inhibitors.===
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<StructureSection load='3sfi' size='340' side='right' caption='[[3sfi]], [[Resolution|resolution]] 2.31&Aring;' scene=''>
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{{ABSTRACT_PUBMED_22098589}}
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== Structural highlights ==
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<table><tr><td colspan='2'>[[3sfi]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/Uncultured_bacterium_'eubacterium_sp.' Uncultured bacterium 'eubacterium sp.']. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3SFI OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=3SFI FirstGlance]. <br>
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==Function==
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</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=3SF:5,5,5-TRIFLUORO-1-{4-[3-(1,3-THIAZOL-2-YL)-1,2,4-OXADIAZOL-5-YL]PIPERIDIN-1-YL}PENTAN-1-ONE'>3SF</scene></td></tr>
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<tr id='related'><td class="sblockLbl"><b>[[Related_structure|Related:]]</b></td><td class="sblockDat">[[3o8g|3o8g]], [[3o8h|3o8h]], [[3g1l|3g1l]], [[3g1m|3g1m]], [[1u9n|1u9n]]</td></tr>
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<tr id='gene'><td class="sblockLbl"><b>[[Gene|Gene:]]</b></td><td class="sblockDat">ethR, MT3970, RV3855 ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=1733 uncultured bacterium 'eubacterium sp.'])</td></tr>
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<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=3sfi FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3sfi OCA], [http://www.rcsb.org/pdb/explore.do?structureId=3sfi RCSB], [http://www.ebi.ac.uk/pdbsum/3sfi PDBsum]</span></td></tr>
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</table>
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== Function ==
[[http://www.uniprot.org/uniprot/ETHR_MYCTU ETHR_MYCTU]] Involved in the repression of the monooxygenase EthA which is responsible of the formation of the active metabolite of ethionamide (ETH).<ref>PMID:10869356</ref> <ref>PMID:10944230</ref>
[[http://www.uniprot.org/uniprot/ETHR_MYCTU ETHR_MYCTU]] Involved in the repression of the monooxygenase EthA which is responsible of the formation of the active metabolite of ethionamide (ETH).<ref>PMID:10869356</ref> <ref>PMID:10944230</ref>
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<div style="background-color:#fffaf0;">
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== Publication Abstract from PubMed ==
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Mycobacterial transcriptional repressor EthR controls the expression of EthA, the bacterial monooxygenase activating ethionamide, and is thus largely responsible for the low sensitivity of the human pathogen Mycobacterium tuberculosis to this antibiotic. We recently reported structure-activity relationships of a series of 1,2,4-oxadiazole EthR inhibitors leading to the discovery of potent ethionamide boosters. Despite high metabolic stability, pharmacokinetic evaluation revealed poor mice exposure; therefore a second phase of optimization was required. Herein structure-property relationships study is reported according to the replacement of the two aromatic heterocycles: 2-thienyl and 1,2,4-oxadiazolyl moieties. This work was done using a combination of structure-based drug design and in vitro/ex vivo evaluations of ethionamide boosters on the targeted protein EthR and on the human pathogen Mycobacterium tuberculosis. Thanks to this process, we identified compound 42 (BDM41906) which displays improved efficacy, in addition to high exposure of mice after oral administration.
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==About this Structure==
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Ethionamide Boosters Part 2: Combining Bioisosteric Replacement and Structure-Based Drug Design to Solve Pharmacokinetic Issues in a Series of Potent 1,2,4-Oxadiazole EthR Inhibitors.,Flipo M, Desroses M, Lecat-Guillet N, Villemagne B, Blondiaux N, Leroux F, Piveteau C, Mathys V, Flament MP, Siepmann J, Villeret V, Wohlkonig A, Wintjens R, Soror SH, Christophe T, Jeon HK, Locht C, Brodin P, Deprez BP, Baulard A, Willand N J Med Chem. 2011 Nov 20. PMID:22098589<ref>PMID:22098589</ref>
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[[3sfi]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/Uncultured_bacterium_'eubacterium_sp.' Uncultured bacterium 'eubacterium sp.']. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3SFI OCA].
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==Reference==
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From MEDLINE&reg;/PubMed&reg;, a database of the U.S. National Library of Medicine.<br>
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<ref group="xtra">PMID:022098589</ref><references group="xtra"/><references/>
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</div>
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== References ==
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<references/>
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__TOC__
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</StructureSection>
[[Category: Uncultured bacterium 'eubacterium sp.']]
[[Category: Uncultured bacterium 'eubacterium sp.']]
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[[Category: Baulard, A R.]]
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[[Category: Baulard, A R]]
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[[Category: Blondiaux, N.]]
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[[Category: Blondiaux, N]]
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[[Category: Brodin, P.]]
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[[Category: Brodin, P]]
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[[Category: Christophe, T.]]
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[[Category: Christophe, T]]
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[[Category: Desroses, M.]]
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[[Category: Desroses, M]]
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[[Category: Flament, M P.]]
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[[Category: Flament, M P]]
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[[Category: Flipo, M.]]
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[[Category: Flipo, M]]
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[[Category: Jeon, H K.]]
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[[Category: Jeon, H K]]
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[[Category: Lecat-Guillet, N.]]
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[[Category: Lecat-Guillet, N]]
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[[Category: Leroux, F.]]
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[[Category: Leroux, F]]
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[[Category: Locht, C.]]
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[[Category: Locht, C]]
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[[Category: Mathys, V.]]
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[[Category: Mathys, V]]
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[[Category: Piveteau, C.]]
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[[Category: Piveteau, C]]
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[[Category: Siepmann, J.]]
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[[Category: Siepmann, J]]
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[[Category: Soror, S H.]]
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[[Category: Soror, S H]]
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[[Category: Villemagne, B.]]
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[[Category: Villemagne, B]]
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[[Category: Villeret, V.]]
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[[Category: Villeret, V]]
[[Category: Willand, N]]
[[Category: Willand, N]]
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[[Category: Wintjens, R.]]
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[[Category: Wintjens, R]]
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[[Category: Wohlkonig, A.]]
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[[Category: Wohlkonig, A]]
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[[Category: Prez, BD.]]
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[[Category: Prez, BD]]
[[Category: Dna]]
[[Category: Dna]]
[[Category: Dna binding protein]]
[[Category: Dna binding protein]]

Revision as of 14:20, 24 December 2014

Ethionamide Boosters Part 2: Combining Bioisosteric Replacement and Structure-Based Drug Design to Solve Pharmacokinetic Issues in a Series of Potent 1,2,4-Oxadiazole EthR Inhibitors.

3sfi, resolution 2.31Å

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