1ao4
From Proteopedia
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|PDB= 1ao4 |SIZE=350|CAPTION= <scene name='initialview01'>1ao4</scene> | |PDB= 1ao4 |SIZE=350|CAPTION= <scene name='initialview01'>1ao4</scene> | ||
|SITE= | |SITE= | ||
| - | |LIGAND= <scene name='pdbligand=3CO:COBALT+(III)+ION'>3CO</scene>, <scene name='pdbligand= | + | |LIGAND= <scene name='pdbligand=3CO:COBALT+(III)+ION'>3CO</scene>, <scene name='pdbligand=3FM:3-O-FORMAMIDO-ALPHA-D-MANNOPYRANOSIDE'>3FM</scene>, <scene name='pdbligand=GUP:BETA-L-GULOPYRANOSIDE'>GUP</scene>, <scene name='pdbligand=PEO:HYDROGEN+PEROXIDE'>PEO</scene>, <scene name='pdbligand=PMY:AGLYCON+OF+PEPLOMYCIN'>PMY</scene> |
|ACTIVITY= | |ACTIVITY= | ||
|GENE= | |GENE= | ||
| + | |DOMAIN= | ||
| + | |RELATEDENTRY= | ||
| + | |RESOURCES=<span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1ao4 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1ao4 OCA], [http://www.ebi.ac.uk/pdbsum/1ao4 PDBsum], [http://www.rcsb.org/pdb/explore.do?structureId=1ao4 RCSB]</span> | ||
}} | }} | ||
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[[Category: Sugiyama, H.]] | [[Category: Sugiyama, H.]] | ||
[[Category: Wang, A H.J.]] | [[Category: Wang, A H.J.]] | ||
| - | [[Category: 3CO]] | ||
| - | [[Category: PEO]] | ||
| - | [[Category: PMY]] | ||
[[Category: anticancer drug]] | [[Category: anticancer drug]] | ||
[[Category: bleomycin]] | [[Category: bleomycin]] | ||
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[[Category: two-dimensional nmr]] | [[Category: two-dimensional nmr]] | ||
| - | ''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on | + | ''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Sun Mar 30 18:44:11 2008'' |
Revision as of 15:44, 30 March 2008
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| Ligands: | , , , , | ||||||
| Resources: | FirstGlance, OCA, PDBsum, RCSB | ||||||
| Coordinates: | save as pdb, mmCIF, xml | ||||||
COBALT(III)-PEPLOMYCIN COMPLEX DETERMINED BY NMR STUDIES
Overview
Pepleomycin (PEP) is a metalloglycopeptide that has stronger anticancer activity and less pulmonary toxicity than bleomycin (BLM). PEP, like BLM, exerts its action by binding to and degrading DNA in the presence of oxygen and certain metals. Obtaining detailed structural information of PEP and PEP-DNA complexes is crucial to understanding its anticancer activity. The structures of two green forms of cobalt-PEP species, HO2-Co(III)-PEP (denoted CoPEP) and deglycosylated HO2-Co(III)-PEP (denoted CodPEP) have been obtained by NOE restrained refinements. Earlier studies of the related HO2-Co(III)-BLM A2 proposed that two chiral conformers (form A or B) could exist with either the beta-aminoalanine primary amine (A,NH2) or the mannose carbamoyl nitrogen (M,NH2) as the axial ligand. Analysis of our NOESY data shows convincingly that form A is the most probable conformer with the mannose carbamoyl M,NH2 and the beta-aminoalanine primary amine A,NH2 as the axial ligands in CoPEP and CodPEP, respectively. The NOE cross-peaks resulting from the interactions between the N-terminus (i.e., the metal-binding domain) and the C-terminus of CoPEP and CodPEP have similar patterns, suggesting that they both adopt compact structures with the bithiazole group folded back over the N-terminus.
About this Structure
1AO4 is a Protein complex structure of sequences from [1]. Full crystallographic information is available from OCA.
Reference
Structures of cobalt(III)-pepleomycin and cobalt(III)-deglycopepleomycin (green forms) determined by NMR studies., Caceres-Cortes J, Sugiyama H, Ikudome K, Saito I, Wang AH, Eur J Biochem. 1997 Mar 15;244(3):818-28. PMID:9108252
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