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4tom

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'''Unreleased structure'''
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==Crystal structure of the E. coli ribosome bound to linopristin. This file contains the 50S subunit of the first 70S ribosome with linopristin bound.==
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<StructureSection load='4tom' size='340' side='right' caption='[[4tom]], [[Resolution|resolution]] 3.00&Aring;' scene=''>
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== Structural highlights ==
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<table><tr><td colspan='2'>[[4tom]] is a 32 chain structure with sequence from [http://en.wikipedia.org/wiki/Escherichia_coli Escherichia coli], [http://en.wikipedia.org/wiki/Escherichia_coli_str._k-12_substr._mds42 Escherichia coli str. k-12 substr. mds42] and [http://en.wikipedia.org/wiki/Thermus_thermophilus Thermus thermophilus]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=4TOM OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=4TOM FirstGlance]. <br>
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</td></tr><tr><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=MG:MAGNESIUM+ION'>MG</scene>, <scene name='pdbligand=ZN:ZINC+ION'>ZN</scene><br>
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<tr><td class="sblockLbl"><b>[[Non-Standard_Residue|NonStd Res:]]</b></td><td class="sblockDat"><scene name='pdbligand=004:(2S)-AMINO(PHENYL)ETHANOIC+ACID'>004</scene>, <scene name='pdbligand=04X:(2S)-5-(MORPHOLIN-4-YLMETHYL)-1,2,3,6-TETRAHYDROPYRIDINE-2-CARBOXYLIC+ACID'>04X</scene>, <scene name='pdbligand=DBB:D-ALPHA-AMINOBUTYRIC+ACID'>DBB</scene>, <scene name='pdbligand=MHU:4-N,N-(DIMETHYLAMINO)-L-PHENYLALANINE'>MHU</scene>, <scene name='pdbligand=MHW:3-HYDROXYPICOLINIC+ACID'>MHW</scene></td></tr>
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<tr><td class="sblockLbl"><b>[[Related_structure|Related:]]</b></td><td class="sblockDat">[[4tol|4tol]], [[4ton|4ton]], [[4too|4too]]</td></tr>
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<tr><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=4tom FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=4tom OCA], [http://www.rcsb.org/pdb/explore.do?structureId=4tom RCSB], [http://www.ebi.ac.uk/pdbsum/4tom PDBsum]</span></td></tr>
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<table>
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<div style="background-color:#fffaf0;">
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== Publication Abstract from PubMed ==
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Streptogramin antibiotics are divided into type A and B streptogramins, which in combination can act synergistically. We compared the molecular interactions of the streptogramin combinations Synercid (type A: dalfopristin, type B: quinupristin) and NXL 103 (type A: flopristin, type B: linopristin) with the Escherichia coli 70S ribosome by x-ray crystallography. We further analyzed the activity of the streptogramin components individually and in combination. Streptogramin A and B components in Synercid and NXL 103 exhibit synergistic antimicrobial activity against certain pathogenic bacteria. However, in transcription-coupled translation assays, only combinations that include dalfopristin, the streptogramin A component of Synercid, show synergy. Notably, the diethylaminoethylsulfonyl group in dalfopristin reduces its activity, but is the basis for synergy in transcription-coupled translation assays before its rapid hydrolysis from the depsipeptide core. Replacement of the diethylaminoethylsulfonyl group in dalfopristin by a non-hydrolyzable group may therefore be beneficial for synergy. The absence of general streptogramin synergy in transcription-coupled translation assays suggests that synergistic antimicrobial activity of streptogramins can occur independently of streptogramin effects on translation.
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The entry 4tom is ON HOLD
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Synergy of streptogramin antibiotics occurs independently of their effects on translation.,Noeske J, Huang J, Olivier NB, Giacobbe RA, Zambrowski M, Cate JH Antimicrob Agents Chemother. 2014 Jun 23. pii: AAC.03389-14. PMID:24957822<ref>PMID:24957822</ref>
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Authors: Noeske, J., Huang, J., Olivier, N.B., Giacobbe, R.A., Zambrowski, M., Cate, J.H.D.
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From MEDLINE&reg;/PubMed&reg;, a database of the U.S. National Library of Medicine.<br>
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</div>
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Description: Crystal structure of the E. coli ribosome bound to linopristin. This file contains the 50S subunit of the first 70S ribosome with linopristin bound.
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== References ==
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<references/>
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__TOC__
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</StructureSection>
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[[Category: Escherichia coli]]
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[[Category: Escherichia coli str. k-12 substr. mds42]]
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[[Category: Thermus thermophilus]]
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[[Category: Cate, J H.D.]]
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[[Category: Giacobbe, R A.]]
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[[Category: Huang, J.]]
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[[Category: Noeske, J.]]
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[[Category: Olivier, N B.]]
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[[Category: Zambrowski, M.]]
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[[Category: 23]]
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[[Category: 50]]
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[[Category: 70]]
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[[Category: Exit]]
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[[Category: Peptidyl]]
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[[Category: Protein biosynthesis]]
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[[Category: Ribosomal subunit]]
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[[Category: Ribosome]]
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[[Category: Rna]]
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[[Category: Transfer]]
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[[Category: Trna]]

Revision as of 07:36, 30 July 2014

Crystal structure of the E. coli ribosome bound to linopristin. This file contains the 50S subunit of the first 70S ribosome with linopristin bound.

4tom, resolution 3.00Å

Drag the structure with the mouse to rotate

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