4bfh

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== Publication Abstract from PubMed ==
== Publication Abstract from PubMed ==
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BACKGROUND: alpha-Amylases constitute a family of enzymes that catalyze the hydrolysis of alpha-D-(1,4)-glucan linkages in starch and related polysaccharides. The Amaranth alpha-amylase inhibitor (AAI) specifically inhibits alpha-amylases from insects, but not from mammalian sources. AAI is the smallest proteinaceous alpha-amylase inhibitor described so far and has no known homologs in the sequence databases. Its mode of inhibition of alpha-amylases was unknown until now. RESULTS: The crystal structure of yellow meal worm alpha-amylase (TMA) in complex with AAI was determined at 2.0 A resolution. The overall fold of AAI, its three-stranded twisted beta sheet and the topology of its disulfide bonds identify it as a knottin-like protein. The inhibitor binds into the active-site groove of TMA, blocking the central four sugar-binding subsites. Residues from two AAI segments target the active-site residues of TMA. A comparison of the TMA-AAI complex with a modeled complex between porcine pancreatic alpha-amylase (PPA) and AAI identified six hydrogen bonds that can be formed only in the TMA-AAI complex. CONCLUSIONS: The binding of AAI to TMA presents a new inhibition mode for alpha-amylases. Due to its unique specificity towards insect alpha-amylases, AAI might represent a valuable tool for protecting crop plants from predatory insects. The close structural homology between AAI and 'knottins' opens new perspectives for the engineering of various novel activities onto the small scaffold of this group of proteins.
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Obesity and type-2 diabetes are chronic metabolic diseases that could be benefited by the use of alpha-amylase inhibitors to manage starch intake. The pseudocyclics, wrightides Wr-AI1 to Wr-AI3, isolated from an Apocynaceae plant show promising potentials for further development as orally active alpha-amylase inhibitors. These linear peptides retain the stability known for cystine knot peptides in harsh treatment. They are resistant to treatment by heat, endopeptidase or exopeptidase, characteristics of cyclic cystine knot peptides. Our NMR and crystallography analysis also showed that wrightides, currently the smallest proteinaceous alpha -amylase inhibitors reported, contain the backbone-twisting cis proline which is preceded by a non-aromatic residue rather than a conventional aromatic residue. Modeled structure and molecular dynamics study of Wr-AI1 in complex with yellow meal worm alpha-amylase suggested that despite similar structure and cystine knot fold, members of knottin-type alpha-amylase inhibitors may bind to insect alpha-amylase via a different set of interactions. Finally, we showed that the precursors of pseudocyclic cystine knot alpha-amylase inhibitors and their biosynthesis in plants follow secretory protein synthesis pathway. Together, our work provides insights for the use of the pseudocyclic alpha-amylase inhibitors as useful leads for developing orally active peptidyl bioactives as well as an alternative scaffold to cyclic peptides for engineering metabolic-stable human alpha-amylase inhibitors. This article is protected by copyright. All rights reserved.
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Specific inhibition of insect alpha-amylases: yellow meal worm alpha-amylase in complex with the amaranth alpha-amylase inhibitor at 2.0 A resolution.,Pereira PJ, Lozanov V, Patthy A, Huber R, Bode W, Pongor S, Strobl S Structure. 1999 Sep 15;7(9):1079-88. PMID:10508777<ref>PMID:10508777</ref>
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Discovery and Characterization of Pseudocyclic Cystine-Knot alpha-Amylase Inhibitors with High Resistance to Heat and Proteolytic Degradation.,Nguyen PQ, Wang S, Kumar A, Yap LJ, Luu TT, Lescar J, Tam JP FEBS J. 2014 Jul 21. doi: 10.1111/febs.12939. PMID:25040200<ref>PMID:25040200</ref>
From MEDLINE&reg;/PubMed&reg;, a database of the U.S. National Library of Medicine.<br>
From MEDLINE&reg;/PubMed&reg;, a database of the U.S. National Library of Medicine.<br>

Revision as of 06:27, 30 July 2014

Crystal structure of alpha-amylase inhibitor wrightide R1 (wR1) peptide from Wrightia religiosa

4bfh, resolution 1.25Å

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