1d0k
From Proteopedia
| Line 4: | Line 4: | ||
|PDB= 1d0k |SIZE=350|CAPTION= <scene name='initialview01'>1d0k</scene>, resolution 2.02Å | |PDB= 1d0k |SIZE=350|CAPTION= <scene name='initialview01'>1d0k</scene>, resolution 2.02Å | ||
|SITE= | |SITE= | ||
| - | |LIGAND= <scene name='pdbligand= | + | |LIGAND= <scene name='pdbligand=ALA:ALANINE'>ALA</scene>, <scene name='pdbligand=AMU:BETA-N-ACETYLMURAMIC+ACID'>AMU</scene>, <scene name='pdbligand=CA:CALCIUM+ION'>CA</scene>, <scene name='pdbligand=DGL:D-GLUTAMIC+ACID'>DGL</scene>, <scene name='pdbligand=GOL:GLYCEROL'>GOL</scene>, <scene name='pdbligand=NAG:N-ACETYL-D-GLUCOSAMINE'>NAG</scene> |
|ACTIVITY= | |ACTIVITY= | ||
|GENE= | |GENE= | ||
| + | |DOMAIN= | ||
| + | |RELATEDENTRY=[[1qus|1QUS]], [[1qut|1QUT]], [[1qdr|1QDR]], [[1qdt|1QDT]], [[1d0k|1D0K]], [[1d0l|1D0L]], [[1d0m|1D0M]] | ||
| + | |RESOURCES=<span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1d0k FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1d0k OCA], [http://www.ebi.ac.uk/pdbsum/1d0k PDBsum], [http://www.rcsb.org/pdb/explore.do?structureId=1d0k RCSB]</span> | ||
}} | }} | ||
| Line 25: | Line 28: | ||
[[Category: Dijkstra, B W.]] | [[Category: Dijkstra, B W.]] | ||
[[Category: Kalk, K H.]] | [[Category: Kalk, K H.]] | ||
| - | [[Category: ALA]] | ||
| - | [[Category: CA]] | ||
| - | [[Category: DGL]] | ||
| - | [[Category: GOL]] | ||
[[Category: alpha-helical protein with a five-stranded antiparallel beta-sheet]] | [[Category: alpha-helical protein with a five-stranded antiparallel beta-sheet]] | ||
[[Category: ef-hand]] | [[Category: ef-hand]] | ||
[[Category: glycosyltransferase]] | [[Category: glycosyltransferase]] | ||
| - | ''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on | + | ''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Sun Mar 30 19:32:12 2008'' |
Revision as of 16:32, 30 March 2008
| |||||||
| , resolution 2.02Å | |||||||
|---|---|---|---|---|---|---|---|
| Ligands: | , , , , , | ||||||
| Related: | 1QUS, 1QUT, 1QDR, 1QDT, 1D0K, 1D0L, 1D0M
| ||||||
| Resources: | FirstGlance, OCA, PDBsum, RCSB | ||||||
| Coordinates: | save as pdb, mmCIF, xml | ||||||
THE ESCHERICHIA COLI LYTIC TRANSGLYCOSYLASE SLT35 IN COMPLEX WITH TWO MURODIPEPTIDES (GLCNAC-MURNAC-L-ALA-D-GLU)
Overview
Lytic transglycosylases catalyze the cleavage of the beta-1, 4-glycosidic bond between N-acetylmuramic acid (MurNAc) and N-acetylglucosamine (GlcNAc) in peptidoglycan with concomitant formation of a 1,6-anhydro bond in the MurNAc residue. To understand the reaction mechanism of Escherichia coli lytic transglycosylase Slt35, three crystal structures have been determined of Slt35 in complex with two different peptidoglycan fragments and with the lytic transglycosylase inhibitor bulgecin A. The complexes define four sugar-binding subsites (-2, -1, +1, and +2) and two peptide-binding sites in a large cleft close to Glu162. The Glu162 side chain is between the -1 and +1 sugar-binding sites, in agreement with a function as catalytic acid/base. The complexes suggest additional contributions to catalysis from Ser216 and Asn339, residues which are conserved among the MltB/Slt35 lytic transglycosylases.
About this Structure
1D0K is a Single protein structure of sequence from Escherichia coli. Full crystallographic information is available from OCA.
Reference
Crystallographic studies of the interactions of Escherichia coli lytic transglycosylase Slt35 with peptidoglycan., van Asselt EJ, Kalk KH, Dijkstra BW, Biochemistry. 2000 Feb 29;39(8):1924-34. PMID:10684641
Page seeded by OCA on Sun Mar 30 19:32:12 2008
