1drm
From Proteopedia
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|PDB= 1drm |SIZE=350|CAPTION= <scene name='initialview01'>1drm</scene>, resolution 2.40Å | |PDB= 1drm |SIZE=350|CAPTION= <scene name='initialview01'>1drm</scene>, resolution 2.40Å | ||
|SITE= | |SITE= | ||
| - | |LIGAND= <scene name='pdbligand=HEM:PROTOPORPHYRIN IX CONTAINING FE'>HEM</scene> | + | |LIGAND= <scene name='pdbligand=HEM:PROTOPORPHYRIN+IX+CONTAINING+FE'>HEM</scene> |
|ACTIVITY= | |ACTIVITY= | ||
|GENE= | |GENE= | ||
| + | |DOMAIN= | ||
| + | |RELATEDENTRY=[[1bv6|1BV6]], [[1bv5|1BV5]], [[1dp6|1DP6]], [[1dp8|1DP8]], [[1dp9|1DP9]] | ||
| + | |RESOURCES=<span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1drm FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1drm OCA], [http://www.ebi.ac.uk/pdbsum/1drm PDBsum], [http://www.rcsb.org/pdb/explore.do?structureId=1drm RCSB]</span> | ||
}} | }} | ||
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[[Category: Hao, B.]] | [[Category: Hao, B.]] | ||
[[Category: Mansy, S S.]] | [[Category: Mansy, S S.]] | ||
| - | [[Category: HEM]] | ||
[[Category: crystal structure]] | [[Category: crystal structure]] | ||
[[Category: fixl]] | [[Category: fixl]] | ||
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[[Category: two-component system]] | [[Category: two-component system]] | ||
| - | ''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on | + | ''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Sun Mar 30 19:47:19 2008'' |
Revision as of 16:47, 30 March 2008
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| , resolution 2.40Å | |||||||
|---|---|---|---|---|---|---|---|
| Ligands: | |||||||
| Related: | 1BV6, 1BV5, 1DP6, 1DP8, 1DP9
| ||||||
| Resources: | FirstGlance, OCA, PDBsum, RCSB | ||||||
| Coordinates: | save as pdb, mmCIF, xml | ||||||
CRYSTAL STRUCTURE OF THE LIGAND FREE BJFIXL HEME DOMAIN
Overview
The FixL proteins are biological oxygen sensors that restrict the expression of specific genes to hypoxic conditions. FixL's oxygen-detecting domain is a heme binding region that controls the activity of an attached histidine kinase. The FixL switch is regulated by binding of oxygen and other strong-field ligands. In the absence of bound ligand, the heme domain permits kinase activity. In the presence of bound ligand, this domain turns off kinase activity. Comparison of the structures of two forms of the Bradyrhizobium japonicum FixL heme domain, one in the "on" state without bound ligand and one in the "off" state with bound cyanide, reveals a mechanism of regulation by a heme that is distinct from the classical hemoglobin models. The close structural resemblance of the FixL heme domain to the photoactive yellow protein confirms the existence of a PAS structural motif but reveals the presence of an alternative regulatory gateway.
About this Structure
1DRM is a Single protein structure of sequence from Bradyrhizobium japonicum. This structure supersedes the now removed PDB entry 1BV6. Full crystallographic information is available from OCA.
Reference
Structure of a biological oxygen sensor: a new mechanism for heme-driven signal transduction., Gong W, Hao B, Mansy SS, Gonzalez G, Gilles-Gonzalez MA, Chan MK, Proc Natl Acad Sci U S A. 1998 Dec 22;95(26):15177-82. PMID:9860942
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