Ferredoxin

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Updated on {{REVISIONDAY2}}-{{MONTHNAME|{{REVISIONMONTH}}}}-{{REVISIONYEAR}}
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{{#tree:id=OrganizedByTopic|openlevels=0|
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===2Fe-2S containing ferredoxins===
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*2Fe-2S containing ferredoxins
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[[2kaj]], [[1dox]], [[1doy]] – SyFd +Ga – ''Synechocystis'' – NMR <br />
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**[[2kaj]], [[1dox]], [[1doy]] – SyFd +Ga – ''Synechocystis'' – NMR <br />
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[[3hui]] – Fd – ''Rhodopseudomonas palustris'' <br />
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**[[3hui]] – Fd – ''Rhodopseudomonas palustris'' <br />
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[[1off]] – SyFd <br />
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**[[1off]] – SyFd <br />
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[[3gce]] – Fd – ''Nocardioides aromaticivorans'' <br />
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**[[3gce]] – Fd – ''Nocardioides aromaticivorans'' <br />
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[[3lxf]] – Fd – ''Novosphingobium aromaticivorans''<br />
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**[[3lxf]] – Fd – ''Novosphingobium aromaticivorans''<br />
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[[2e4p]], [[2e4q]] - Fd – ''Pseudomonas sp.'' <br />
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**[[2e4p]], [[2e4q]] - Fd – ''Pseudomonas sp.'' <br />
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[[2q3w]], [[1vm9]] - PmFd (mutant) – ''Pseudomonas mendocina'' <br />
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**[[2q3w]], [[1vm9]] - PmFd (mutant) – ''Pseudomonas mendocina'' <br />
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[[2i7f]], [[1uwm]] - RcFd – ''Rhodobacter capsulatus'' <br />
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**[[2i7f]], [[1uwm]] - RcFd – ''Rhodobacter capsulatus'' <br />
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[[1e9m]] – RcFd - NMR<br />
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**[[1e9m]] – RcFd - NMR<br />
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[[1rfk]], [[3p63]] - Fd – ''Cyanobacterium'' ''masticogladus laminosus'' <br />
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**[[1rfk]], [[3p63]] - Fd – ''Cyanobacterium'' ''masticogladus laminosus'' <br />
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[[1vck]] - Fd – ''Pseudomonas resinovorans'' <br />
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**[[1vck]] - Fd – ''Pseudomonas resinovorans'' <br />
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[[1wri]], [[1frr]] - Fd – E''quisetum arvense'' <br />
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**[[1wri]], [[1frr]] - Fd – E''quisetum arvense'' <br />
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[[1sjg]] - PmFd– NMR <br />
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**[[1sjg]] - PmFd– NMR <br />
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[[1iue]] - Fd– ''Plasmodium falciparum'' <br />
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**[[1iue]] - Fd– ''Plasmodium falciparum'' <br />
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[[1m2a]] – AeFd – ''Aquifex aeolicu''s <br />
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**[[1m2a]] – AeFd – ''Aquifex aeolicu''s <br />
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[[1m2b]], [[1m2d]], [[1f37]], [[1f5b]], [[1f5c]] – AeFd (mutant) <br />
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**[[1m2b]], [[1m2d]], [[1f37]], [[1f5b]], [[1f5c]] – AeFd (mutant) <br />
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[[1l5p]] – Fd – ''Trichomonas vaginali''s <br />
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**[[1l5p]] – Fd – ''Trichomonas vaginali''s <br />
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[[1i7h]] - Fd – ''Escherichia coli'' <br />
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**[[1i7h]] - Fd – ''Escherichia coli'' <br />
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[[1czp]], [[1qt9]], [[1frd]], [[1fxa]] - aFd– ''anabaena'' <br />
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**[[1czp]], [[1qt9]], [[1frd]], [[1fxa]] - aFd– ''anabaena'' <br />
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[[1j7a]], [[1j7b]], [[1j7c]] , [[1qoa]], [[1qob]], [[1qof]], [[1qog]]- aFd (mutant) <br />
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**[[1j7a]], [[1j7b]], [[1j7c]] , [[1qoa]], [[1qob]], [[1qof]], [[1qog]]- aFd (mutant) <br />
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[[1e0z]] – Fd – ''Halobacterium salinarium'' <br />
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**[[1e0z]] – Fd – ''Halobacterium salinarium'' <br />
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[[1e10]] - Fd – ''Halobacterium halobium''<br />
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**[[1e10]] - Fd – ''Halobacterium halobium''<br />
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[[1pfd]] – Fd – ''Petroselinum crispum'' – NMR <br />
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**[[1pfd]] – Fd – ''Petroselinum crispum'' – NMR <br />
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[[1a70]] - Fd (mutant) – ''Spinacia oleracea'' <br />
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**[[1a70]] - Fd (mutant) – ''Spinacia oleracea'' <br />
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[[1awd]] - Fd – ''Chlorella fusca'' <br />
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**[[1awd]] - Fd – ''Chlorella fusca'' <br />
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[[2cjn]], [[2cjo]], [[1roe]] – SyFd – NMR <br />
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**[[2cjn]], [[2cjo]], [[1roe]] – SyFd – NMR <br />
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[[1rof]] – SyFd – ''Synechococcus elongates'' <br />
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**[[1rof]] – SyFd – ''Synechococcus elongates'' <br />
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[[1doi]] - Fd – ''Haloarcula marismortui'' <br />
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**[[1doi]] - Fd – ''Haloarcula marismortui'' <br />
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[[4fxc]] – Fd – ''Spirulina platensi''s <br />
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**[[4fxc]] – Fd – ''Spirulina platensi''s <br />
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[[1fxi]], [[3av8]] – Fd – ''Aphanothece sacrum'' <br />
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**[[1fxi]], [[3av8]] – Fd – ''Aphanothece sacrum'' <br />
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[[3dqy]], [[2qpz]], [[3ah7]] - Fd – ''Pseudomonas putida'' <br />
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**[[3dqy]], [[2qpz]], [[3ah7]] - Fd – ''Pseudomonas putida'' <br />
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[[3ab5]], [[3wcq]] – Fd – ''Cyanidioschyzon merolae''<br />
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**[[3ab5]], [[3wcq]] – Fd – ''Cyanidioschyzon merolae''<br />
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[[3b2f]] – mFd – maize<br />
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**[[3b2f]] – mFd – maize<br />
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[[3w5u]], [[3w5v]] – mFd + ferredoxin-NADP reductase<br />
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**[[3w5u]], [[3w5v]] – mFd + ferredoxin-NADP reductase<br />
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[[3b2g]] – Fd – ''Leptolyngbya boryana''
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**[[3b2g]] – Fd – ''Leptolyngbya boryana''
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===4Fe-4S containing ferredoxins ===
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*4Fe-4S containing ferredoxins
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[[3eun]] – AvFd – ''Allochromatium vinosum'' <br />
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**[[3eun]] – AvFd – ''Allochromatium vinosum'' <br />
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[[3exy]] - AvFd (mutant) <br />
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**[[3exy]] - AvFd (mutant) <br />
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[[2vkr]] - Fd+Zn – ''Acidianus ambivalens'' <br />
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**[[2vkr]] - Fd+Zn – ''Acidianus ambivalens'' <br />
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[[2z8q]] - PfFd (mutant) – ''Pyrococcus furiosus'' <br />
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**[[2z8q]] - PfFd (mutant) – ''Pyrococcus furiosus'' <br />
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[[1siz]] - PfFd<br >
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**[[1siz]] - PfFd<br >
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[[3pni]] - PfFd (mutant)<br />
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**[[3pni]] - PfFd (mutant)<br />
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[[2fgo]] - Fd– ''Pseudomonas aeruginosa'' <br />
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**[[2fgo]] - Fd– ''Pseudomonas aeruginosa'' <br />
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[[1iqz]], [[1ir0]] - BtFd – ''Bacillus thermoproteolyticus'' <br />
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**[[1iqz]], [[1ir0]] - BtFd – ''Bacillus thermoproteolyticus'' <br />
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[[1rgv]] - Fd – ''Thauera aromatica'' <br />
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**[[1rgv]] - Fd – ''Thauera aromatica'' <br />
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[[1dax]], [[1dfd]] – DaFd – ''Desulfovibrio africanus'' – NMR <br />
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**[[1dax]], [[1dfd]] – DaFd – ''Desulfovibrio africanus'' – NMR <br />
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[[1fxr]] - DaFd <br />
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**[[1fxr]] - DaFd <br />
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[[1vjw]] – Fd – ''Thermotoga maritima'' <br />
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**[[1vjw]] – Fd – ''Thermotoga maritima'' <br />
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[[1dwl]] – Fd – ''Desulfomicrobium norvegicum''<br />
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**[[1dwl]] – Fd – ''Desulfomicrobium norvegicum''<br />
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===3Fe-4S containing ferredoxins===
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*3Fe-4S containing ferredoxins
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[[2v2k]] – Fd – ''Mycobacterium smegmatis'' <br />
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**[[2v2k]] – Fd – ''Mycobacterium smegmatis'' <br />
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[[1wtf]] - BtFd (mutant) <br />
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**[[1wtf]] - BtFd (mutant) <br />
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[[1sj1]] - PfFd <br />
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**[[1sj1]] - PfFd <br />
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[[1fxd]] - DgFd – ''Desulfovibrio gigas'' <br />
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**[[1fxd]] - DgFd – ''Desulfovibrio gigas'' <br />
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[[1f2g]] – DgFd – NMR <br />
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**[[1f2g]] – DgFd – NMR <br />
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[[1xer]] - Fd – ''Sulfolobus tokodaii'' <br />
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**[[1xer]] - Fd – ''Sulfolobus tokodaii'' <br />
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===4Fe-4S+3Fe-4S containing ferredoxins===
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*4Fe-4S+3Fe-4S containing ferredoxins
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[[1gao]], [[6fdr]], [[7fd1]], [[7fdr]], [[1axq]], [[6fd1]], [[1frh]], [[1fri]],[[1frj]], [[1frk]], [[1frl]], [[1frm]], [[1fda]], [[1fdb]], [[1fdd]], [[5fd1]], [[1fer]] – AvFd – ''Azotobacter vinelandii'' <br />
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**[[1gao]], [[6fdr]], [[7fd1]], [[7fdr]], [[1axq]], [[6fd1]], [[1frh]], [[1fri]],[[1frj]], [[1frk]], [[1frl]], [[1frm]], [[1fda]], [[1fdb]], [[1fdd]], [[5fd1]], [[1fer]] – AvFd – ''Azotobacter vinelandii'' <br />
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[[1pc4]], [[1pc5]], [[1g6b]], [[1g3o]], [[1ff2]], [[1b0v]], [[1d3w]], [[1b0t]], [[1a6l]], [[1ftc]], [[1frx]], [[2fd2]], [[1fd2]] - AvFd (mutant) <br />
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**[[1pc4]], [[1pc5]], [[1g6b]], [[1g3o]], [[1ff2]], [[1b0v]], [[1d3w]], [[1b0t]], [[1a6l]], [[1ftc]], [[1frx]], [[2fd2]], [[1fd2]] - AvFd (mutant) <br />
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[[1h98]] – Fd – ''Thermus thermophilus'' <br />
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**[[1h98]] – Fd – ''Thermus thermophilus'' <br />
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[[1a8p]], [[1bd6]], [[1bc6]] - BsFd – ''Bacillus schlegelii'' – NMR <br />
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**[[1a8p]], [[1bd6]], [[1bc6]] - BsFd – ''Bacillus schlegelii'' – NMR <br />
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===4Fe-4S+4Fe-4S containing ferredoxins===
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*4Fe-4S+4Fe-4S containing ferredoxins
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[[1dur]] – Fd – ''Peptoniphilus asaccarolyticus'' <br />
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**[[1dur]] – Fd – ''Peptoniphilus asaccarolyticus'' <br />
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[[1bwe]], [[1bqx]] - BsFd (mutant) – NMR <br />
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**[[1bwe]], [[1bqx]] - BsFd (mutant) – NMR <br />
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[[2fdn]], [[1fca]] , [[1fdn]]- Fd – ''Clostridium acidi-urici'' <br />
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**[[2fdn]], [[1fca]] , [[1fdn]] - Fd – ''Clostridium acidi-urici'' <br />
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[[1blu]] - Fd – ''Chromatium vinosum'' <br />
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**[[1blu]] - Fd – ''Chromatium vinosum'' <br />
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[[1clf ]]– Fd – ''Clostridium pasteurianum'' – NMR <br />
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**[[1clf]] – Fd – ''Clostridium pasteurianum'' – NMR <br />
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===Adrenoredoxin===
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*Adrenoredoxin
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[[2jqr]] – ADR Fd domain (mutant)+cytochrome c (mutant) – yeast – NMR <br />
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**[[2jqr]] – ADR Fd domain (mutant)+cytochrome c (mutant) – yeast – NMR <br />
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[[2bt6]] – cADR1 modified – cow <br />
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**[[2bt6]] – cADR1 modified – cow <br />
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[[1l6u]], [[1l6v]] – cADR1 – NMR <br />
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**[[1l6u]], [[1l6v]] – cADR1 – NMR <br />
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[[1e6e]] – cADR (mutant)+ADR reductase <br />
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**[[1e6e]] – cADR (mutant)+ADR reductase <br />
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[[1cje]], [[1ayf]] - cADR <br />
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**[[1cje]], [[1ayf]] - cADR <br />
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[[3na0]], [[3n9y]], [[3n9z]], [[3na1]] - hADR +cholesterol side-chain cleavage enzyme – human<br />
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**[[3na0]], [[3n9y]], [[3n9z]], [[3na1]] - hADR +cholesterol side-chain cleavage enzyme – human<br />
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[[3p1m]] - hADR
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**[[3p1m]] - hADR
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===Putidaredoxin===
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*Putidaredoxin
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[[1yji]], [[1yjj]], [[1pdx]] – PpPUT – NMR <br />
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**[[1yji]], [[1yjj]], [[1pdx]] – PpPUT – NMR <br />
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[[3lb8]] – PpPUT (mutant)+PUT reductase <br />
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**[[3lb8]] – PpPUT (mutant)+PUT reductase <br />
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[[1xln]], [[1xlo]], [[1xlp]], [[1xlq]], [[1r7s]], [[1oqq]], [[1oqr]] - PpPUT (mutant) <br />
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**[[1xln]], [[1xlo]], [[1xlp]], [[1xlq]], [[1r7s]], [[1oqq]], [[1oqr]] - PpPUT (mutant) <br />
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[[1gpx]], [[1put]]- PpPUT (mutant) - NMR <br />
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**[[1gpx]], [[1put]]- PpPUT (mutant) - NMR <br />
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[[4jws]] - PpPUT + cytochrome P450cam<br />
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**[[4jws]] - PpPUT + cytochrome P450cam<br />
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[[3w9c]], [[4jwu]] - PpPUT (mutant) + cytochrome P450cam<br />
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**[[3w9c]], [[4jwu]] - PpPUT (mutant) + cytochrome P450cam<br />
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[[2m56]] - PpPUT (mutant) + cytochrome P450cam - NMR<br />
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**[[2m56]] - PpPUT (mutant) + cytochrome P450cam - NMR<br />
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[[4jx1]] - PpPUT (mutant) + cytochrome P450cam + camphor + hydroxycamphor<br />
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**[[4jx1]] - PpPUT (mutant) + cytochrome P450cam + camphor + hydroxycamphor<br />
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===Terpredoxin===
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*Terpredoxin
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+
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[[1b9r]] – TER – ''Pseudomonas'' - NMR <br />
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**[[1b9r]] – TER – ''Pseudomonas'' - NMR <br />
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}}
==References==
==References==
<references/>
<references/>

Revision as of 07:09, 25 November 2014

Ferredoxin with Fe4S4 cluster complex with cobalt hexamine (PDB code 2z8q)

Drag the structure with the mouse to rotate

3D structures of ferredoxin

Updated on 25-November-2014

References

  1. Lovgreen MN, Martic M, Windahl MS, Christensen HE, Harris P. Crystal structures of the all-cysteinyl-coordinated D14C variant of Pyrococcus furiosus ferredoxin: [4Fe-4S] <--> [3Fe-4S] cluster conversion. J Biol Inorg Chem. 2011 Apr 12. PMID:21484348 doi:10.1007/s00775-011-0778-7
  2. Iwasaki T, Kappl R, Bracic G, Shimizu N, Ohmori D, Kumasaka T. ISC-like [2Fe-2S] ferredoxin (FdxB) dimer from Pseudomonas putida JCM 20004: structural and electron-nuclear double resonance characterization. J Biol Inorg Chem. 2011 Jun 7. PMID:21647778 doi:10.1007/s00775-011-0793-8
  3. Martic M, Jakab-Simon IN, Haahr LT, Hagen WR, Christensen HE. Heterometallic [AgFe(3)S (4)] ferredoxin variants: synthesis, characterization, and the first crystal structure of an engineered heterometallic iron-sulfur protein. J Biol Inorg Chem. 2013 Feb;18(2):261-76. doi: 10.1007/s00775-012-0971-3. Epub, 2013 Jan 8. PMID:23296387 doi:10.1007/s00775-012-0971-3
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