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Ferredoxin
From Proteopedia
(Difference between revisions)
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| + | {{#tree:id=OrganizedByTopic|openlevels=0| | ||
| - | + | *2Fe-2S containing ferredoxins | |
| - | [[2kaj]], [[1dox]], [[1doy]] – SyFd +Ga – ''Synechocystis'' – NMR <br /> | + | **[[2kaj]], [[1dox]], [[1doy]] – SyFd +Ga – ''Synechocystis'' – NMR <br /> |
| - | [[3hui]] – Fd – ''Rhodopseudomonas palustris'' <br /> | + | **[[3hui]] – Fd – ''Rhodopseudomonas palustris'' <br /> |
| - | [[1off]] – SyFd <br /> | + | **[[1off]] – SyFd <br /> |
| - | [[3gce]] – Fd – ''Nocardioides aromaticivorans'' <br /> | + | **[[3gce]] – Fd – ''Nocardioides aromaticivorans'' <br /> |
| - | [[3lxf]] – Fd – ''Novosphingobium aromaticivorans''<br /> | + | **[[3lxf]] – Fd – ''Novosphingobium aromaticivorans''<br /> |
| - | [[2e4p]], [[2e4q]] - Fd – ''Pseudomonas sp.'' <br /> | + | **[[2e4p]], [[2e4q]] - Fd – ''Pseudomonas sp.'' <br /> |
| - | [[2q3w]], [[1vm9]] - PmFd (mutant) – ''Pseudomonas mendocina'' <br /> | + | **[[2q3w]], [[1vm9]] - PmFd (mutant) – ''Pseudomonas mendocina'' <br /> |
| - | [[2i7f]], [[1uwm]] - RcFd – ''Rhodobacter capsulatus'' <br /> | + | **[[2i7f]], [[1uwm]] - RcFd – ''Rhodobacter capsulatus'' <br /> |
| - | [[1e9m]] – RcFd - NMR<br /> | + | **[[1e9m]] – RcFd - NMR<br /> |
| - | [[1rfk]], [[3p63]] - Fd – ''Cyanobacterium'' ''masticogladus laminosus'' <br /> | + | **[[1rfk]], [[3p63]] - Fd – ''Cyanobacterium'' ''masticogladus laminosus'' <br /> |
| - | [[1vck]] - Fd – ''Pseudomonas resinovorans'' <br /> | + | **[[1vck]] - Fd – ''Pseudomonas resinovorans'' <br /> |
| - | [[1wri]], [[1frr]] - Fd – E''quisetum arvense'' <br /> | + | **[[1wri]], [[1frr]] - Fd – E''quisetum arvense'' <br /> |
| - | [[1sjg]] - PmFd– NMR <br /> | + | **[[1sjg]] - PmFd– NMR <br /> |
| - | [[1iue]] - Fd– ''Plasmodium falciparum'' <br /> | + | **[[1iue]] - Fd– ''Plasmodium falciparum'' <br /> |
| - | [[1m2a]] – AeFd – ''Aquifex aeolicu''s <br /> | + | **[[1m2a]] – AeFd – ''Aquifex aeolicu''s <br /> |
| - | [[1m2b]], [[1m2d]], [[1f37]], [[1f5b]], [[1f5c]] – AeFd (mutant) <br /> | + | **[[1m2b]], [[1m2d]], [[1f37]], [[1f5b]], [[1f5c]] – AeFd (mutant) <br /> |
| - | [[1l5p]] – Fd – ''Trichomonas vaginali''s <br /> | + | **[[1l5p]] – Fd – ''Trichomonas vaginali''s <br /> |
| - | [[1i7h]] - Fd – ''Escherichia coli'' <br /> | + | **[[1i7h]] - Fd – ''Escherichia coli'' <br /> |
| - | [[1czp]], [[1qt9]], [[1frd]], [[1fxa]] - aFd– ''anabaena'' <br /> | + | **[[1czp]], [[1qt9]], [[1frd]], [[1fxa]] - aFd– ''anabaena'' <br /> |
| - | [[1j7a]], [[1j7b]], [[1j7c]] , [[1qoa]], [[1qob]], [[1qof]], [[1qog]]- aFd (mutant) <br /> | + | **[[1j7a]], [[1j7b]], [[1j7c]] , [[1qoa]], [[1qob]], [[1qof]], [[1qog]]- aFd (mutant) <br /> |
| - | [[1e0z]] – Fd – ''Halobacterium salinarium'' <br /> | + | **[[1e0z]] – Fd – ''Halobacterium salinarium'' <br /> |
| - | [[1e10]] - Fd – ''Halobacterium halobium''<br /> | + | **[[1e10]] - Fd – ''Halobacterium halobium''<br /> |
| - | [[1pfd]] – Fd – ''Petroselinum crispum'' – NMR <br /> | + | **[[1pfd]] – Fd – ''Petroselinum crispum'' – NMR <br /> |
| - | [[1a70]] - Fd (mutant) – ''Spinacia oleracea'' <br /> | + | **[[1a70]] - Fd (mutant) – ''Spinacia oleracea'' <br /> |
| - | [[1awd]] - Fd – ''Chlorella fusca'' <br /> | + | **[[1awd]] - Fd – ''Chlorella fusca'' <br /> |
| - | [[2cjn]], [[2cjo]], [[1roe]] – SyFd – NMR <br /> | + | **[[2cjn]], [[2cjo]], [[1roe]] – SyFd – NMR <br /> |
| - | [[1rof]] – SyFd – ''Synechococcus elongates'' <br /> | + | **[[1rof]] – SyFd – ''Synechococcus elongates'' <br /> |
| - | [[1doi]] - Fd – ''Haloarcula marismortui'' <br /> | + | **[[1doi]] - Fd – ''Haloarcula marismortui'' <br /> |
| - | [[4fxc]] – Fd – ''Spirulina platensi''s <br /> | + | **[[4fxc]] – Fd – ''Spirulina platensi''s <br /> |
| - | [[1fxi]], [[3av8]] – Fd – ''Aphanothece sacrum'' <br /> | + | **[[1fxi]], [[3av8]] – Fd – ''Aphanothece sacrum'' <br /> |
| - | [[3dqy]], [[2qpz]], [[3ah7]] - Fd – ''Pseudomonas putida'' <br /> | + | **[[3dqy]], [[2qpz]], [[3ah7]] - Fd – ''Pseudomonas putida'' <br /> |
| - | [[3ab5]], [[3wcq]] – Fd – ''Cyanidioschyzon merolae''<br /> | + | **[[3ab5]], [[3wcq]] – Fd – ''Cyanidioschyzon merolae''<br /> |
| - | [[3b2f]] – mFd – maize<br /> | + | **[[3b2f]] – mFd – maize<br /> |
| - | [[3w5u]], [[3w5v]] – mFd + ferredoxin-NADP reductase<br /> | + | **[[3w5u]], [[3w5v]] – mFd + ferredoxin-NADP reductase<br /> |
| - | [[3b2g]] – Fd – ''Leptolyngbya boryana'' | + | **[[3b2g]] – Fd – ''Leptolyngbya boryana'' |
| - | + | *4Fe-4S containing ferredoxins | |
| - | [[3eun]] – AvFd – ''Allochromatium vinosum'' <br /> | + | **[[3eun]] – AvFd – ''Allochromatium vinosum'' <br /> |
| - | [[3exy]] - AvFd (mutant) <br /> | + | **[[3exy]] - AvFd (mutant) <br /> |
| - | [[2vkr]] - Fd+Zn – ''Acidianus ambivalens'' <br /> | + | **[[2vkr]] - Fd+Zn – ''Acidianus ambivalens'' <br /> |
| - | [[2z8q]] - PfFd (mutant) – ''Pyrococcus furiosus'' <br /> | + | **[[2z8q]] - PfFd (mutant) – ''Pyrococcus furiosus'' <br /> |
| - | [[1siz]] - PfFd<br > | + | **[[1siz]] - PfFd<br > |
| - | [[3pni]] - PfFd (mutant)<br /> | + | **[[3pni]] - PfFd (mutant)<br /> |
| - | [[2fgo]] - Fd– ''Pseudomonas aeruginosa'' <br /> | + | **[[2fgo]] - Fd– ''Pseudomonas aeruginosa'' <br /> |
| - | [[1iqz]], [[1ir0]] - BtFd – ''Bacillus thermoproteolyticus'' <br /> | + | **[[1iqz]], [[1ir0]] - BtFd – ''Bacillus thermoproteolyticus'' <br /> |
| - | [[1rgv]] - Fd – ''Thauera aromatica'' <br /> | + | **[[1rgv]] - Fd – ''Thauera aromatica'' <br /> |
| - | [[1dax]], [[1dfd]] – DaFd – ''Desulfovibrio africanus'' – NMR <br /> | + | **[[1dax]], [[1dfd]] – DaFd – ''Desulfovibrio africanus'' – NMR <br /> |
| - | [[1fxr]] - DaFd <br /> | + | **[[1fxr]] - DaFd <br /> |
| - | [[1vjw]] – Fd – ''Thermotoga maritima'' <br /> | + | **[[1vjw]] – Fd – ''Thermotoga maritima'' <br /> |
| - | [[1dwl]] – Fd – ''Desulfomicrobium norvegicum''<br /> | + | **[[1dwl]] – Fd – ''Desulfomicrobium norvegicum''<br /> |
| - | + | *3Fe-4S containing ferredoxins | |
| - | [[2v2k]] – Fd – ''Mycobacterium smegmatis'' <br /> | + | **[[2v2k]] – Fd – ''Mycobacterium smegmatis'' <br /> |
| - | [[1wtf]] - BtFd (mutant) <br /> | + | **[[1wtf]] - BtFd (mutant) <br /> |
| - | [[1sj1]] - PfFd <br /> | + | **[[1sj1]] - PfFd <br /> |
| - | [[1fxd]] - DgFd – ''Desulfovibrio gigas'' <br /> | + | **[[1fxd]] - DgFd – ''Desulfovibrio gigas'' <br /> |
| - | [[1f2g]] – DgFd – NMR <br /> | + | **[[1f2g]] – DgFd – NMR <br /> |
| - | [[1xer]] - Fd – ''Sulfolobus tokodaii'' <br /> | + | **[[1xer]] - Fd – ''Sulfolobus tokodaii'' <br /> |
| - | + | *4Fe-4S+3Fe-4S containing ferredoxins | |
| - | [[1gao]], [[6fdr]], [[7fd1]], [[7fdr]], [[1axq]], [[6fd1]], [[1frh]], [[1fri]],[[1frj]], [[1frk]], [[1frl]], [[1frm]], [[1fda]], [[1fdb]], [[1fdd]], [[5fd1]], [[1fer]] – AvFd – ''Azotobacter vinelandii'' <br /> | + | **[[1gao]], [[6fdr]], [[7fd1]], [[7fdr]], [[1axq]], [[6fd1]], [[1frh]], [[1fri]],[[1frj]], [[1frk]], [[1frl]], [[1frm]], [[1fda]], [[1fdb]], [[1fdd]], [[5fd1]], [[1fer]] – AvFd – ''Azotobacter vinelandii'' <br /> |
| - | [[1pc4]], [[1pc5]], [[1g6b]], [[1g3o]], [[1ff2]], [[1b0v]], [[1d3w]], [[1b0t]], [[1a6l]], [[1ftc]], [[1frx]], [[2fd2]], [[1fd2]] - AvFd (mutant) <br /> | + | **[[1pc4]], [[1pc5]], [[1g6b]], [[1g3o]], [[1ff2]], [[1b0v]], [[1d3w]], [[1b0t]], [[1a6l]], [[1ftc]], [[1frx]], [[2fd2]], [[1fd2]] - AvFd (mutant) <br /> |
| - | [[1h98]] – Fd – ''Thermus thermophilus'' <br /> | + | **[[1h98]] – Fd – ''Thermus thermophilus'' <br /> |
| - | [[1a8p]], [[1bd6]], [[1bc6]] - BsFd – ''Bacillus schlegelii'' – NMR <br /> | + | **[[1a8p]], [[1bd6]], [[1bc6]] - BsFd – ''Bacillus schlegelii'' – NMR <br /> |
| - | + | *4Fe-4S+4Fe-4S containing ferredoxins | |
| - | [[1dur]] – Fd – ''Peptoniphilus asaccarolyticus'' <br /> | + | **[[1dur]] – Fd – ''Peptoniphilus asaccarolyticus'' <br /> |
| - | [[1bwe]], [[1bqx]] - BsFd (mutant) – NMR <br /> | + | **[[1bwe]], [[1bqx]] - BsFd (mutant) – NMR <br /> |
| - | [[2fdn]], [[1fca]] , [[1fdn]]- Fd – ''Clostridium acidi-urici'' <br /> | + | **[[2fdn]], [[1fca]] , [[1fdn]] - Fd – ''Clostridium acidi-urici'' <br /> |
| - | [[1blu]] - Fd – ''Chromatium vinosum'' <br /> | + | **[[1blu]] - Fd – ''Chromatium vinosum'' <br /> |
| - | [[1clf ]]– Fd – ''Clostridium pasteurianum'' – NMR <br /> | + | **[[1clf]] – Fd – ''Clostridium pasteurianum'' – NMR <br /> |
| - | + | *Adrenoredoxin | |
| - | [[2jqr]] – ADR Fd domain (mutant)+cytochrome c (mutant) – yeast – NMR <br /> | + | **[[2jqr]] – ADR Fd domain (mutant)+cytochrome c (mutant) – yeast – NMR <br /> |
| - | [[2bt6]] – cADR1 modified – cow <br /> | + | **[[2bt6]] – cADR1 modified – cow <br /> |
| - | [[1l6u]], [[1l6v]] – cADR1 – NMR <br /> | + | **[[1l6u]], [[1l6v]] – cADR1 – NMR <br /> |
| - | [[1e6e]] – cADR (mutant)+ADR reductase <br /> | + | **[[1e6e]] – cADR (mutant)+ADR reductase <br /> |
| - | [[1cje]], [[1ayf]] - cADR <br /> | + | **[[1cje]], [[1ayf]] - cADR <br /> |
| - | [[3na0]], [[3n9y]], [[3n9z]], [[3na1]] - hADR +cholesterol side-chain cleavage enzyme – human<br /> | + | **[[3na0]], [[3n9y]], [[3n9z]], [[3na1]] - hADR +cholesterol side-chain cleavage enzyme – human<br /> |
| - | [[3p1m]] - hADR | + | **[[3p1m]] - hADR |
| - | + | *Putidaredoxin | |
| - | [[1yji]], [[1yjj]], [[1pdx]] – PpPUT – NMR <br /> | + | **[[1yji]], [[1yjj]], [[1pdx]] – PpPUT – NMR <br /> |
| - | [[3lb8]] – PpPUT (mutant)+PUT reductase <br /> | + | **[[3lb8]] – PpPUT (mutant)+PUT reductase <br /> |
| - | [[1xln]], [[1xlo]], [[1xlp]], [[1xlq]], [[1r7s]], [[1oqq]], [[1oqr]] - PpPUT (mutant) <br /> | + | **[[1xln]], [[1xlo]], [[1xlp]], [[1xlq]], [[1r7s]], [[1oqq]], [[1oqr]] - PpPUT (mutant) <br /> |
| - | [[1gpx]], [[1put]]- PpPUT (mutant) - NMR <br /> | + | **[[1gpx]], [[1put]]- PpPUT (mutant) - NMR <br /> |
| - | [[4jws]] - PpPUT + cytochrome P450cam<br /> | + | **[[4jws]] - PpPUT + cytochrome P450cam<br /> |
| - | [[3w9c]], [[4jwu]] - PpPUT (mutant) + cytochrome P450cam<br /> | + | **[[3w9c]], [[4jwu]] - PpPUT (mutant) + cytochrome P450cam<br /> |
| - | [[2m56]] - PpPUT (mutant) + cytochrome P450cam - NMR<br /> | + | **[[2m56]] - PpPUT (mutant) + cytochrome P450cam - NMR<br /> |
| - | [[4jx1]] - PpPUT (mutant) + cytochrome P450cam + camphor + hydroxycamphor<br /> | + | **[[4jx1]] - PpPUT (mutant) + cytochrome P450cam + camphor + hydroxycamphor<br /> |
| - | + | *Terpredoxin | |
| - | + | ||
| - | + | ||
| + | **[[1b9r]] – TER – ''Pseudomonas'' - NMR <br /> | ||
| + | }} | ||
==References== | ==References== | ||
<references/> | <references/> | ||
Revision as of 07:09, 25 November 2014
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3D structures of ferredoxin
Updated on 25-November-2014
References
- ↑ Lovgreen MN, Martic M, Windahl MS, Christensen HE, Harris P. Crystal structures of the all-cysteinyl-coordinated D14C variant of Pyrococcus furiosus ferredoxin: [4Fe-4S] <--> [3Fe-4S] cluster conversion. J Biol Inorg Chem. 2011 Apr 12. PMID:21484348 doi:10.1007/s00775-011-0778-7
- ↑ Iwasaki T, Kappl R, Bracic G, Shimizu N, Ohmori D, Kumasaka T. ISC-like [2Fe-2S] ferredoxin (FdxB) dimer from Pseudomonas putida JCM 20004: structural and electron-nuclear double resonance characterization. J Biol Inorg Chem. 2011 Jun 7. PMID:21647778 doi:10.1007/s00775-011-0793-8
- ↑ Martic M, Jakab-Simon IN, Haahr LT, Hagen WR, Christensen HE. Heterometallic [AgFe(3)S (4)] ferredoxin variants: synthesis, characterization, and the first crystal structure of an engineered heterometallic iron-sulfur protein. J Biol Inorg Chem. 2013 Feb;18(2):261-76. doi: 10.1007/s00775-012-0971-3. Epub, 2013 Jan 8. PMID:23296387 doi:10.1007/s00775-012-0971-3
Proteopedia Page Contributors and Editors (what is this?)
Michal Harel, Alexander Berchansky, Joel L. Sussman, Jaime Prilusky, Eran Hodis, Wayne Decatur, David Canner

![Skewed orientations of the gmax component (red) with respect to the molecular frame of the [2Fe–2S] cluster of FdxB.](/wiki/images/2/29/FdxBFig8.jpg)
