This old version of Proteopedia is provided for student assignments while the new version is undergoing repairs. Content and edits done in this old version of Proteopedia after March 1, 2026 will eventually be lost when it is retired in about June of 2026.


Apply for new accounts at the new Proteopedia. Your logins will work in both the old and new versions.


2fm3

From Proteopedia

(Difference between revisions)
Jump to: navigation, search
Current revision (12:22, 17 December 2014) (edit) (undo)
(Redirecting to 4nd4)
 
Line 1: Line 1:
-
==Crystal structure of the Lactate Dehydrogenase from Cryptosporidium parvum complexed with substrate (Pyruvic acid) and cofactor (b-Nicotinamide adenine dinucleotide)==
+
#REDIRECT [[4nd4]] This PDB entry is obsolete and replaced by 4nd4
-
<StructureSection load='2fm3' size='340' side='right' caption='[[2fm3]], [[Resolution|resolution]] 2.20&Aring;' scene=''>
+
-
== Structural highlights ==
+
-
<table><tr><td colspan='2'>[[2fm3]] is a 2 chain structure with sequence from [http://en.wikipedia.org/wiki/Cryptosporidium_parvum Cryptosporidium parvum]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2FM3 OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2FM3 FirstGlance]. <br>
+
-
</td></tr><tr><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=GOL:GLYCEROL'>GOL</scene>, <scene name='pdbligand=NAD:NICOTINAMIDE-ADENINE-DINUCLEOTIDE'>NAD</scene>, <scene name='pdbligand=PYR:PYRUVIC+ACID'>PYR</scene><br>
+
-
<tr><td class="sblockLbl"><b>[[Related_structure|Related:]]</b></td><td class="sblockDat">[[2ewd|2ewd]]</td></tr>
+
-
<tr><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[http://en.wikipedia.org/wiki/L-lactate_dehydrogenase L-lactate dehydrogenase], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=1.1.1.27 1.1.1.27] </span></td></tr>
+
-
<tr><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2fm3 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2fm3 OCA], [http://www.rcsb.org/pdb/explore.do?structureId=2fm3 RCSB], [http://www.ebi.ac.uk/pdbsum/2fm3 PDBsum]</span></td></tr>
+
-
<table>
+
-
== Evolutionary Conservation ==
+
-
[[Image:Consurf_key_small.gif|200px|right]]
+
-
Check<jmol>
+
-
<jmolCheckbox>
+
-
<scriptWhenChecked>select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/fm/2fm3_consurf.spt"</scriptWhenChecked>
+
-
<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
+
-
<text>to colour the structure by Evolutionary Conservation</text>
+
-
</jmolCheckbox>
+
-
</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/chain_selection.php?pdb_ID=2ata ConSurf].
+
-
<div style="clear:both"></div>
+
-
 
+
-
==See Also==
+
-
*[[Lactate Dehydrogenase|Lactate Dehydrogenase]]
+
-
__TOC__
+
-
</StructureSection>
+
-
[[Category: Cryptosporidium parvum]]
+
-
[[Category: L-lactate dehydrogenase]]
+
-
[[Category: Chattopadhyay, D.]]
+
-
[[Category: Senkovich, O A.]]
+
-
[[Category: Oxidoreductase]]
+
-
[[Category: Protein-substrate-cofactor complex]]
+

Current revision

  1. REDIRECT 4nd4 This PDB entry is obsolete and replaced by 4nd4

Proteopedia Page Contributors and Editors (what is this?)

OCA

Personal tools