Ribosome 3D structures
From Proteopedia
m (→large + small ribosomal subunit) |
m |
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| Line 2: | Line 2: | ||
===30S subunit + RNA=== | ===30S subunit + RNA=== | ||
| - | [[2zm6]], [[1n36]], [[1j5e]], [[3oto]] - Tt30S ribosomal subunit+THX+16S RRNA – Thermus thermophiles<br /> | + | [[2zm6]], [[1n36]], [[1j5e]], [[3oto]] - Tt30S ribosomal subunit+THX+16S RRNA – ''Thermus thermophiles''<br /> |
[[2vqe]], [[2vqf]], [[2uuc]], [[2e5l]], [[2uu9]], [[2uua]], [[2uub]], [[3pyn]], [[3pyq]], [[3pys]], [[3pyu]] - Tt30S ribosomal subunit+16S RRNA+RNA fragment<br /> | [[2vqe]], [[2vqf]], [[2uuc]], [[2e5l]], [[2uu9]], [[2uua]], [[2uub]], [[3pyn]], [[3pyq]], [[3pys]], [[3pyu]] - Tt30S ribosomal subunit+16S RRNA+RNA fragment<br /> | ||
| - | [[3kc4]] - | + | [[3kc4]] - ''E. coli'' 30S ribosomal subunit - Escherichia coli<br /> |
| - | [[3i1m]], [[3i1o]], [[3df1]], [[3df3]], [[2vho]], [[2vhp]], [[2avy]], [[2aw7]], [[1pnx]] - | + | [[3i1m]], [[3i1o]], [[3df1]], [[3df3]], [[2vho]], [[2vhp]], [[2avy]], [[2aw7]], [[1pnx]] - ''E. coli'' 30S ribosomal subunit+16S RRNA<br /> |
[[1i94]], [[1fka]], [[3uxs]], [[3uxt]], [[4dr1]] - Tt30S ribosomal subunit+16S RRNA<br /> | [[1i94]], [[1fka]], [[3uxs]], [[3uxt]], [[4dr1]] - Tt30S ribosomal subunit+16S RRNA<br /> | ||
[[4duy]], [[4duz]], [[4dv0]], [[4dv1]], [[4dv2]], [[4dv3]], [[4dv4]], [[4dv5]], [[4dv6]], [[4dv7]] - Tt30S ribosomal subunit+16S RRNA (mutant)<br /> | [[4duy]], [[4duz]], [[4dv0]], [[4dv1]], [[4dv2]], [[4dv3]], [[4dv4]], [[4dv5]], [[4dv6]], [[4dv7]] - Tt30S ribosomal subunit+16S RRNA (mutant)<br /> | ||
[[4dr4]], [[4b3m]], [[4b3r]], [[4b3s]], [[4b3t]] - Tt30S ribosomal subunit+16S RRNA + mRNA<br /> | [[4dr4]], [[4b3m]], [[4b3r]], [[4b3s]], [[4b3t]] - Tt30S ribosomal subunit+16S RRNA + mRNA<br /> | ||
| - | [[1p87]] - | + | [[1p87]] - ''E. coli'' 30S ribosomal subunit+16S RRNA – Cryo-EM<br /> |
| - | [[3bbn]] - | + | [[3bbn]] - ''Spinacia oleracea'' (spinach) 30S ribosomal subunit+16S RRNA – Cryo-EM – spinach<br /> |
=== 30S subunit + chain release factor=== | === 30S subunit + chain release factor=== | ||
| Line 32: | Line 32: | ||
[[3zn7]], [[3znd]] - Tt30S ribosomal subunit+16S RRNA+A-site tRNA Ile agmatidine + E-site tRNA Ile agmatidine + mRNA<br /> | [[3zn7]], [[3znd]] - Tt30S ribosomal subunit+16S RRNA+A-site tRNA Ile agmatidine + E-site tRNA Ile agmatidine + mRNA<br /> | ||
[[3uz6]], [[3uz7]], [[3uzg]], [[3uzi]] - Tt30S ribosomal subunit+16S RRNA+tRNA Tyr + tRNA fMet + mRNA<br /> | [[3uz6]], [[3uz7]], [[3uzg]], [[3uzi]] - Tt30S ribosomal subunit+16S RRNA+tRNA Tyr + tRNA fMet + mRNA<br /> | ||
| - | [[2i2p]], [[2i2u]] - | + | [[2i2p]], [[2i2u]] - ''E. coli'' 30S ribosomal subunit+16S RRNA+tRNA Phe+mRNA<br /> |
[[2hgr]], [[3v6u]], [[3v6v]], [[4ej9]], [[4eja]] - Tt30S ribosomal subunit+16S RRNA+tRNA Phe+tRNA fMet+mRNA<br /> | [[2hgr]], [[3v6u]], [[3v6v]], [[4ej9]], [[4eja]] - Tt30S ribosomal subunit+16S RRNA+tRNA Phe+tRNA fMet+mRNA<br /> | ||
[[1yl4]] – Tt30S ribosomal subunit+ tRNA Phe+16S RRNA+THRS mRNA operator<br /> | [[1yl4]] – Tt30S ribosomal subunit+ tRNA Phe+16S RRNA+THRS mRNA operator<br /> | ||
| - | [[1pns]] - | + | [[1pns]] - ''E. coli'' 30S ribosomal subunit+ tRNA Phe+16S RRNA+mRNA <br /> |
| - | [[3j13]] - | + | [[3j13]] - ''E. coli'' 30S ribosomal subunit+ P-site tRNA +16S RRNA+mRNA – Cryo-EM<br /> |
[[3j0u]], [[3j0v]], [[3j0x]], [[3j0z]], [[3j10]], [[3j20]] - Ec30S ribosomal subunit+ A-site tRNA + P-site tRNA +16S RRNA+mRNA – Cryo-EM<br /> | [[3j0u]], [[3j0v]], [[3j0x]], [[3j0z]], [[3j10]], [[3j20]] - Ec30S ribosomal subunit+ A-site tRNA + P-site tRNA +16S RRNA+mRNA – Cryo-EM<br /> | ||
[[1xnq]], [[1xnr]] - Tt30S ribosomal subunit+THX+mRNA+tRNA anticodon+16S RRNA<br /> | [[1xnq]], [[1xnr]] - Tt30S ribosomal subunit+THX+mRNA+tRNA anticodon+16S RRNA<br /> | ||
| Line 55: | Line 55: | ||
[[3i8h]], [[3i9b]], [[3i9d]] - Tt30S ribosomal subunit+THX+P-site tRNA+mRNA +16S RRNA<br /> | [[3i8h]], [[3i9b]], [[3i9d]] - Tt30S ribosomal subunit+THX+P-site tRNA+mRNA +16S RRNA<br /> | ||
[[1ibk]] - Tt30S ribosomal subunit+THX+P-site mRNA fragment +16S RRNA<br /> | [[1ibk]] - Tt30S ribosomal subunit+THX+P-site mRNA fragment +16S RRNA<br /> | ||
| - | [[2wwl]] - | + | [[2wwl]] - ''E. coli'' 30S ribosomal subunit+Poly-Ala chain+P-site tRNA+mRNA +16S RRNA <br /> |
| - | [[3i1q]] - | + | [[3i1q]] - ''E. coli''30S ribosomal subunit+P-site tRNA hairpin+mRNA <br /> |
[[3i1s]], [[3i1z]], [[3i21]] - Ec30S ribosomal subunit+P-site tRNA hairpin+mRNA +16S RNA<br /> | [[3i1s]], [[3i1z]], [[3i21]] - Ec30S ribosomal subunit+P-site tRNA hairpin+mRNA +16S RNA<br /> | ||
[[2om7]] – TtRPS2+TtRPS12+TtRPL1+ P-site tRNA+16S RRNA fragment+23S RRNA fragment<br /> | [[2om7]] – TtRPS2+TtRPS12+TtRPL1+ P-site tRNA+16S RRNA fragment+23S RRNA fragment<br /> | ||
| Line 73: | Line 73: | ||
===30S subunit+A-site tRNA+P-site tRNA+E-site tRNA=== | ===30S subunit+A-site tRNA+P-site tRNA+E-site tRNA=== | ||
| - | [[2gy9]], [[2gyb]] - | + | [[2gy9]], [[2gyb]] - ''E. coli'' 30S ribosomal subunit+P-site tRNA+A-site tRNA+E-site tRNA+mRNA +16S RRNA – Cryo-EM<br /> |
[[1jgo]], [[1jgp]], [[1jgq]], [[1gix]] - Tt30S ribosomal subunit+P-site tRNA+A-site tRNA+E-site tRNA+tRNA Phe+mRNA +16S RRNA<br /> | [[1jgo]], [[1jgp]], [[1jgq]], [[1gix]] - Tt30S ribosomal subunit+P-site tRNA+A-site tRNA+E-site tRNA+tRNA Phe+mRNA +16S RRNA<br /> | ||
[[4k0p]] - Tt30S ribosomal subunit+P-site tRNA+A-site tRNA+E-site tRNA +mRNA +16S RRNA<br /> | [[4k0p]] - Tt30S ribosomal subunit+P-site tRNA+A-site tRNA+E-site tRNA +mRNA +16S RRNA<br /> | ||
| - | [[3e1a]], [[3e1c]] - | + | [[3e1a]], [[3e1c]] - 'E. coli'' 30S ribosomal subunit+P-site tRNA+A-site tRNA+E-site tRNA+mRNA +16S RRNA<br /> |
===30S subunit + antibiotics=== | ===30S subunit + antibiotics=== | ||
| Line 83: | Line 83: | ||
[[1hnx]], [[1hnw]], [[1hnz]], [[1fjg]], [[4aqy]], [[4dr5]], [[4dr6]], [[4dr7]], [[4khp]] - Tt30S ribosomal subunit+16S RRNA+mRNA fragment+antibiotic <br /> | [[1hnx]], [[1hnw]], [[1hnz]], [[1fjg]], [[4aqy]], [[4dr5]], [[4dr6]], [[4dr7]], [[4khp]] - Tt30S ribosomal subunit+16S RRNA+mRNA fragment+antibiotic <br /> | ||
[[2qbb]], [[2qb9]], [[1vs5]], [[1vs7]] , [[2qan]], [[2qal]], [[2qou]], [[2qow]], [[2qoy,]] [[2qp0]], [[2z4k]], [[2z4m]], [[3oaq]], [[3oar]], [[3ofa]], [[3ofb]], [[3ofo]], [[3ofp]], [[3ofx]], [[3ofy]], [[3or9]], [[3ora]] - Ec30S ribosomal subunit+16S RRNA+antibiotic<br /> | [[2qbb]], [[2qb9]], [[1vs5]], [[1vs7]] , [[2qan]], [[2qal]], [[2qou]], [[2qow]], [[2qoy,]] [[2qp0]], [[2z4k]], [[2z4m]], [[3oaq]], [[3oar]], [[3ofa]], [[3ofb]], [[3ofo]], [[3ofp]], [[3ofx]], [[3ofy]], [[3or9]], [[3ora]] - Ec30S ribosomal subunit+16S RRNA+antibiotic<br /> | ||
| - | [[4gaq]], [[4gas]] - | + | [[4gaq]], [[4gas]] - ''E. coli'' 30S ribosomal subunit+16S RRNA+ mRNA + antibiotic<br /> |
[[3sfs]] - Ec30S ribosomal subunit+16S RRNA+ mRNA + RF-3 + antibiotic<br /> | [[3sfs]] - Ec30S ribosomal subunit+16S RRNA+ mRNA + RF-3 + antibiotic<br /> | ||
[[2j00]], [[2j02]] - Tt30S ribosomal subunit+16S RRNA+paromomycin+P-site tRNA fMet+E-site tRNA Phe+mRNA<br /> | [[2j00]], [[2j02]] - Tt30S ribosomal subunit+16S RRNA+paromomycin+P-site tRNA fMet+E-site tRNA Phe+mRNA<br /> | ||
| Line 93: | Line 93: | ||
===30S subunit + ribosome recycling factor=== | ===30S subunit + ribosome recycling factor=== | ||
| - | [[2qbd]], [[2qbf]] - | + | [[2qbd]], [[2qbf]] -''E. coli''30S ribosomal subunit+16S RRNA+ribosome recycling factor<br /> |
[[3r8n]], [[3r8o]], [[4gd1]], [[4gd2]] - Ec30S ribosomal subunit+16S RRNA+ribosome recycling factor + mRNA + tRNA<br /> | [[3r8n]], [[3r8o]], [[4gd1]], [[4gd2]] - Ec30S ribosomal subunit+16S RRNA+ribosome recycling factor + mRNA + tRNA<br /> | ||
| - | [[2qbh]], [[2qbj]] - | + | [[2qbh]], [[2qbj]] - ''E. coli'' 30S ribosomal subunit+16S RRNA+ribosome recycling factor+gentamicin<br /> |
[[2v46]], [[2v48]] - Tt30S ribosomal subunit+16S RRNA+ribosome recycling factor+P-site tRNA Phe+mRNA+tRNA fMet<br /> | [[2v46]], [[2v48]] - Tt30S ribosomal subunit+16S RRNA+ribosome recycling factor+P-site tRNA Phe+mRNA+tRNA fMet<br /> | ||
| Line 105: | Line 105: | ||
[[4abr]] - Tt30S ribosomal subunit+THX + E/P-site tRNA fMet +mRNA codon+16S RRNA+elongation factor TU<br /> | [[4abr]] - Tt30S ribosomal subunit+THX + E/P-site tRNA fMet +mRNA codon+16S RRNA+elongation factor TU<br /> | ||
[[2y0u]], [[2y0w]], [[2y0y]], [[2y12]], [[2y10]], [[2y18]], [[2y14]], [[2y16]] - Tt30S ribosomal subunit+THX+A-site tRNA+E-site tRNA+mRNA codon+16S RRNA+elongation factor TU<br /> | [[2y0u]], [[2y0w]], [[2y0y]], [[2y12]], [[2y10]], [[2y18]], [[2y14]], [[2y16]] - Tt30S ribosomal subunit+THX+A-site tRNA+E-site tRNA+mRNA codon+16S RRNA+elongation factor TU<br /> | ||
| - | [[3fih]] - | + | [[3fih]] - ''E. coli'' 30S ribosomal subunit+A-site tRNA Phe+P-site tRNA+mRNA +16S RRNA+elongation factor TU<br /> |
| - | [[3izv]] - | + | [[3izv]] - ''E. coli'' 30S ribosomal subunit+A/T-site tRNA Phe +16S RRNA+elongation factor TU<br /> |
| - | [[3j18]] - | + | [[3j18]] - ''E. coli'' 30S ribosomal subunit+A/T-site tRNA Phe +16S RRNA+ mRNA + SSRA-binding protein + formyl-Met specific initiator tRNA + elongation factor G – Cryo-EM<br /> |
| - | [[3izw]] - | + | [[3izw]] - ''E. coli'' 30S ribosomal subunit+A-site tRNA Phe +mRNA +16S RRNA+elongation factor TU<br /> |
[[3huw]], [[3huy]] - Tt30S ribosomal subunit+THX+tRNA-Met+mRNA +16S RRNA+elongation factor P<br /> | [[3huw]], [[3huy]] - Tt30S ribosomal subunit+THX+tRNA-Met+mRNA +16S RRNA+elongation factor P<br /> | ||
[[4b8f]], [[4b8h]] - Tt30S ribosomal subunit+THX+RNA+mRNA +16S RRNA+elongation factor G<br /> | [[4b8f]], [[4b8h]] - Tt30S ribosomal subunit+THX+RNA+mRNA +16S RRNA+elongation factor G<br /> | ||
| Line 114: | Line 114: | ||
[[4juw]] - Tt30S ribosomal subunit+THX+ tRNA Phe +16S RRNA + mRNA +elongation factor G<br /> | [[4juw]] - Tt30S ribosomal subunit+THX+ tRNA Phe +16S RRNA + mRNA +elongation factor G<br /> | ||
[[4kbt]], [[4kbv]], [[4kcy]], [[4kd0]], [[4kd8]], [[4kda]] - Tt30S ribosomal subunit+THX+ tRNA Met +16S RRNA + mRNA + viomycin + elongation factor G<br /> | [[4kbt]], [[4kbv]], [[4kcy]], [[4kd0]], [[4kd8]], [[4kda]] - Tt30S ribosomal subunit+THX+ tRNA Met +16S RRNA + mRNA + viomycin + elongation factor G<br /> | ||
| - | [[4kiy]], [[4kj0]], [[4kj2]], [[4kj4]], [[4kj6]], [[4kj8]], [[4kja]], [[4kjc]] - | + | [[4kiy]], [[4kj0]], [[4kj2]], [[4kj4]], [[4kj6]], [[4kj8]], [[4kja]], [[4kjc]] - ''E. coli'' 30S ribosomal subunit +16S RRNA + viomycin + elongation factor G<br /> |
===30S subunit + translation initiation factor=== | ===30S subunit + translation initiation factor=== | ||
| Line 126: | Line 126: | ||
[[2xfz]], [[2xg1]] - Tt30S ribosomal subunit+colicin-E3 fragment+16S RRNA+mRNA+E-site tRNA+THX<br /> | [[2xfz]], [[2xg1]] - Tt30S ribosomal subunit+colicin-E3 fragment+16S RRNA+mRNA+E-site tRNA+THX<br /> | ||
[[1voq]], [[1vos]] , [[1vov]], [[1vox]], [[1voz]] - Ec30S ribosomal subunit+protein Y+16S RRNA<br /> | [[1voq]], [[1vos]] , [[1vov]], [[1vox]], [[1voz]] - Ec30S ribosomal subunit+protein Y+16S RRNA<br /> | ||
| - | [[3j36]] - | + | [[3j36]] - ''E. coli'' 30S ribosomal subunit+ tetracycline resistance protein +16S RRNA + mRNA + P-tRNA – Cryo-EM<br /> |
[[1x18]] – TtRPS2+TtRPS7+TtRPS11+TtRPS18+GTP-binding protein ERA+RNA fragments<br /> | [[1x18]] – TtRPS2+TtRPS7+TtRPS11+TtRPS18+GTP-binding protein ERA+RNA fragments<br /> | ||
[[4dh9]], [[4dhb]] - Tt30S ribosomal subunit +16S RRNA+mRNA+P-site tRNA fMet +THX + YAEJ<br /> | [[4dh9]], [[4dhb]] - Tt30S ribosomal subunit +16S RRNA+mRNA+P-site tRNA fMet +THX + YAEJ<br /> | ||
[[3v22]], [[3v24]], [[3v26]], [[3v28]] - Tt30S ribosomal subunit +16S RRNA +THX + modulation factor<br /> | [[3v22]], [[3v24]], [[3v26]], [[3v28]] - Tt30S ribosomal subunit +16S RRNA +THX + modulation factor<br /> | ||
[[3v2c]], [[3v2e]] - Tt30S ribosomal subunit +16S RRNA +THX + ribosome-associated inhibitor<br /> | [[3v2c]], [[3v2e]] - Tt30S ribosomal subunit +16S RRNA +THX + ribosome-associated inhibitor<br /> | ||
| - | [[3j00]] – | + | [[3j00]] – ''E. coli'' RPS2 + 16S RRNA + FTSQ + apolipoprotein A-I<br /> |
| - | [[2ykr]] - | + | [[2ykr]] - ''E. coli'' RPS2 + 16S RRNA + GMPPNP + GTPase RSGA<br /> |
| - | [[4a2i]] - | + | [[4a2i]] - ''E. coli'' RPS2 + 16S RRNA + GTPase RSGA – Cryo EM<br /> |
| - | [[3uoq]] - | + | [[3uoq]] - ''E. coli'' RPS2 + 16S RRNA + mRNA + peptide chain release factor<br /> |
| - | [[4adv]] - | + | [[4adv]] - ''E. coli'' RPS2 + 16S RRNA + methyltransferase – Cryo EM<br /> |
===40S ribosomal subunit=== | ===40S ribosomal subunit=== | ||
| Line 141: | Line 141: | ||
[[3jyv]] - Tl40S ribosomal subunit+RACK1+S19E+P-site tRNA – Thermomyces lanuginosus<br /> | [[3jyv]] - Tl40S ribosomal subunit+RACK1+S19E+P-site tRNA – Thermomyces lanuginosus<br /> | ||
[[2xzm]], [[2xzn]] - Tet40S ribosomal subunit+RACK1 – Tetrahymena thermophila<br /> | [[2xzm]], [[2xzn]] - Tet40S ribosomal subunit+RACK1 – Tetrahymena thermophila<br /> | ||
| - | [[1s1h]] - | + | [[1s1h]] - ''Saccharomyces cerevisiae'' (yeast) 40S ribosomal subunit+18S RRNA+elongation factor 2 – Cryo-EM – yeast<br /> |
| - | [[3izb]] - | + | [[3izb]] - ''Saccharomyces cerevisiae'' (yeast) 40S ribosomal subunit+ RACK1 – Cryo-EM<br /> |
| - | [[3o2z]], [[3o30]] - | + | [[3o2z]], [[3o30]] - ''Saccharomyces cerevisiae'' (yeast) 40S ribosomal subunit+ RACK1<br /> |
| - | [[3u5c]], [[3u5g]] - | + | [[3u5c]], [[3u5g]] - ''Saccharomyces cerevisiae'' (yeast) 40S ribosomal subunit+ RACK1 + suppressor protein SMT1<br /> |
[[3iz6]] - w40S ribosomal subunit+RACK1 – wheat<br /> | [[3iz6]] - w40S ribosomal subunit+RACK1 – wheat<br /> | ||
[[3j38]] - Dm40S ribosomal subunit + EF-2 + guanine nucleotide-binding protein – Drosophila melanogaster – Cryo-EM<br /> | [[3j38]] - Dm40S ribosomal subunit + EF-2 + guanine nucleotide-binding protein – Drosophila melanogaster – Cryo-EM<br /> | ||
| Line 160: | Line 160: | ||
[[2xg0]], [[2xg2]], [[3kir]], [[3kit]], [[3kiw]], [[3kiy]] – Tt50S subunit+RNA fragments<br /> | [[2xg0]], [[2xg2]], [[3kir]], [[3kit]], [[3kiw]], [[3kiy]] – Tt50S subunit+RNA fragments<br /> | ||
[[3fin]], [[2xtg]], [[2xux]] - Tt50S subunit+5S RRNA+23S RRNA – Cryo-EM<br /> | [[3fin]], [[2xtg]], [[2xux]] - Tt50S subunit+5S RRNA+23S RRNA – Cryo-EM<br /> | ||
| - | [[2wwq]] – | + | [[2wwq]] – ''E. coli'' 50S subunit+5S RRNA+23S RRNA+mRNA+P-site tRNA <br /> |
[[3i1n]], [[3i1p]], [[3i1r]], [[3i1t]], [[3i20]], [[3i22]], [[3e1b]], [[3e1d]], [[3df2]], [[3df4]], [[2vhn]], [[2qov]], [[2qox]], [[2i2t]], [[2i2v]], [[1vs6]], [[1vs8]], [[2aw4]], [[2awb]], [[3ofd]], [[3og0]], [[3oas]], [[3oat]], [[3uos]], [[3r8s]], [[3r8t]], [[3j37]], [[4kix]], [[4kiz]], [[4kj1]], [[4kj3]], [[4kj5]], [[4kj7]], [[4kj9]], [[4kjb]] - Ec50S subunit+5S RRNA+23S RRNA <br /> | [[3i1n]], [[3i1p]], [[3i1r]], [[3i1t]], [[3i20]], [[3i22]], [[3e1b]], [[3e1d]], [[3df2]], [[3df4]], [[2vhn]], [[2qov]], [[2qox]], [[2i2t]], [[2i2v]], [[1vs6]], [[1vs8]], [[2aw4]], [[2awb]], [[3ofd]], [[3og0]], [[3oas]], [[3oat]], [[3uos]], [[3r8s]], [[3r8t]], [[3j37]], [[4kix]], [[4kiz]], [[4kj1]], [[4kj3]], [[4kj5]], [[4kj7]], [[4kj9]], [[4kjb]] - Ec50S subunit+5S RRNA+23S RRNA <br /> | ||
[[3fik]], [[2gya]], [[2gyc]], [[1p85]], [[1p86]], [[3izt]], [[3izu]], [[3j0t]], [[3j0w]], [[3j0y]], [[3j11]], [[3j12]], [[3j14]], [[3j19]] - Ec50S subunit+5S RRNA+23S RRNA – Cryo-EM<br /> | [[3fik]], [[2gya]], [[2gyc]], [[1p85]], [[1p86]], [[3izt]], [[3izu]], [[3j0t]], [[3j0w]], [[3j0y]], [[3j11]], [[3j12]], [[3j14]], [[3j19]] - Ec50S subunit+5S RRNA+23S RRNA – Cryo-EM<br /> | ||
| - | [[3kcr]] - | + | [[3kcr]] - ''E. coli'' 50S subunit+5S RRNA+23S RRNA+preprotein translocase<br /> |
[[3bbo]] - s50S subunit+5S RRNA+23S RRNA+4.8S RRNA – Cryo-EM <br /> | [[3bbo]] - s50S subunit+5S RRNA+23S RRNA+4.8S RRNA – Cryo-EM <br /> | ||
[[2zjq]], [[2zjr]], [[1nkw]] - Dr50S subunit+5S RRNA+23S RRNA – Deinococcus radiodurans<br /> | [[2zjq]], [[2zjr]], [[1nkw]] - Dr50S subunit+5S RRNA+23S RRNA – Deinococcus radiodurans<br /> | ||
| Line 175: | Line 175: | ||
[[1vq6]], [[1vqk]], [[1vqn]] – Hm50S subunit+5S RRNA+23S RRNA+ c-hpmn+CCA-Phe-caproic acid-biotin<br /> | [[1vq6]], [[1vqk]], [[1vqn]] – Hm50S subunit+5S RRNA+23S RRNA+ c-hpmn+CCA-Phe-caproic acid-biotin<br /> | ||
[[1vqo]] – Hm50S subunit+5S RRNA+23S RRNA+ CCPMN<br /> | [[1vqo]] – Hm50S subunit+5S RRNA+23S RRNA+ CCPMN<br /> | ||
| - | [[3iy9]] – 50S subunit – Leishmania taretolae<br /> | + | [[3iy9]] – 50S subunit – ''Leishmania taretolae''<br /> |
[[2ftc]] – 50S subunit+5S RRNA+23S RRNA – bovine - Cryo_EM<br /> | [[2ftc]] – 50S subunit+5S RRNA+23S RRNA – bovine - Cryo_EM<br /> | ||
| - | [[3j21]] – 50S subunit + P0 + LX – Pyrococcus furiosus – Cryo EM<br /> | + | [[3j21]] – 50S subunit + P0 + LX – ''Pyrococcus furiosus'' – Cryo EM<br /> |
[[3j3v]], [[3j3w]] - 50S subunit+5S RRNA+23S RRNA – Bacillus subtilis<br /> | [[3j3v]], [[3j3w]] - 50S subunit+5S RRNA+23S RRNA – Bacillus subtilis<br /> | ||
| Line 191: | Line 191: | ||
[[3jyw]] - 60S subunit – Thermomyces lanuginosus – Cryo-EM<br /> | [[3jyw]] - 60S subunit – Thermomyces lanuginosus – Cryo-EM<br /> | ||
| - | [[1s1i]], [[1s1h]] - | + | [[1s1i]], [[1s1h]] - ''Saccharomyces cerevisiae'' (yeast) 60S ribosomal subunit+ 5.8S RRNA+ 5S RRNA – Cryo-EM <br /> |
| - | [[3izs]] - | + | [[3izs]] - ''Saccharomyces cerevisiae'' (yeast) 60S subunit – Cryo-EM<br /> |
| - | [[3u5e]], [[3u5i]] - | + | [[3u5e]], [[3u5i]] - ''Saccharomyces cerevisiae'' (yeast) 60S subunit <br /> |
| - | [[3o58]], [[3o5h]] - | + | [[3o58]], [[3o5h]] - ''Saccharomyces cerevisiae'' (yeast) 60S ribosomal subunit+ 5.8S RRNA+ 5S RRNA + 25S RRNA<br /> |
[[3izr]], [[3izt]], [[3izu]], [[3izs]] - w60S subunit <br /> | [[3izr]], [[3izt]], [[3izu]], [[3izs]] - w60S subunit <br /> | ||
[[3j39]] – Dm60S subunit – Cryo-EM<br /> | [[3j39]] – Dm60S subunit – Cryo-EM<br /> | ||
| Line 215: | Line 215: | ||
[[2qbe]], [[2qbg]], [[2qbi]], [[2qbk]], [[2z4l]], [[2z4n]] - Ec50S subunit+5S RRNA+23S RRNA+RRF<br /> | [[2qbe]], [[2qbg]], [[2qbi]], [[2qbk]], [[2z4l]], [[2z4n]] - Ec50S subunit+5S RRNA+23S RRNA+RRF<br /> | ||
| - | [[2rdo]] - | + | [[2rdo]] - ''E. coli''50S subunit+5S RRNA+23S RRNA+EF-G+RRF – Cryo-EM<br /> |
[[3j0d]] - Tt50S subunit+5S RRNA+23S RRNA+RRF – Cryo-EM<br /> | [[3j0d]] - Tt50S subunit+5S RRNA+23S RRNA+RRF – Cryo-EM<br /> | ||
=== 50S subunit + various proteins=== | === 50S subunit + various proteins=== | ||
| - | [[2vhm]] - | + | [[2vhm]] - ''E. coli'' 50S subunit+5S RRNA+23S RRNA+PDF C-terminal helix<br /> |
| - | [[2j28]] - | + | [[2j28]] - ''E. coli'' 50S subunit+5S RRNA+23S RRNA+signal recognition particle – Cryo-EM<br /> |
[[1vor]], [[1vou]], [[1vow]], [[1voy]], [[1vp0]], [[1pnu]], [[1pny]] - Ec50S subunit+5S RRNA+23S RRNA+general stress protein Ctc<br /> | [[1vor]], [[1vou]], [[1vow]], [[1voy]], [[1vp0]], [[1pnu]], [[1pny]] - Ec50S subunit+5S RRNA+23S RRNA+general stress protein Ctc<br /> | ||
| - | [[3j01]] - | + | [[3j01]] - ''E. coli'' 50S subunit+5S RRNA+23S RRNA + SECYE – Cryo-EM<br /> |
[[1w2b]] - Hm50S subunit+5S RRNA+23S RRNA+trigger factor N-terminal<br /> | [[1w2b]] - Hm50S subunit+5S RRNA+23S RRNA+trigger factor N-terminal<br /> | ||
| Line 229: | Line 229: | ||
[[4a18]], [[4a19]], [[4a1b]], [[4a1d]] - Tet60S subunit+ 26S RRNA+ translation initiation factor 6 <br /> | [[4a18]], [[4a19]], [[4a1b]], [[4a1d]] - Tet60S subunit+ 26S RRNA+ translation initiation factor 6 <br /> | ||
| - | [[3izs]] – | + | [[3izs]] – ''Saccharomyces cerevisiae'' (yeast) 60S subunit + P0 + P1 + P2 - Cryo EM<br /> |
| - | [[3u5i]] – | + | [[3u5i]] – ''Saccharomyces cerevisiae'' (yeast) 60S subunit + P0<br /> |
| - | [[4b6a]] – | + | [[4b6a]] – ''Saccharomyces cerevisiae'' (yeast) 60S subunit + P0 + P1 + P2 + ARX1 - Cryo EM<br /> |
| - | [[3o5h]] – | + | [[3o5h]] – ''Saccharomyces cerevisiae'' (yeast) 60S subunit + 5S RRNA + 5.8S RRNA + 25S RRNA + P0<br /> |
[[3j39]] – Dm60S subunit + P0 – Drosophila melanogaster - Cryo EM<br /> | [[3j39]] – Dm60S subunit + P0 – Drosophila melanogaster - Cryo EM<br /> | ||
[[3j3b]] – h60S subunit + P0 + P1 + P2 – human - Cryo EM<br /> | [[3j3b]] – h60S subunit + P0 + P1 + P2 – human - Cryo EM<br /> | ||
Revision as of 18:10, 29 September 2014
Updated on 29-September-2014 For a general description of the protein see Ribosome
30S subunit + RNA
2zm6, 1n36, 1j5e, 3oto - Tt30S ribosomal subunit+THX+16S RRNA – Thermus thermophiles
2vqe, 2vqf, 2uuc, 2e5l, 2uu9, 2uua, 2uub, 3pyn, 3pyq, 3pys, 3pyu - Tt30S ribosomal subunit+16S RRNA+RNA fragment
3kc4 - E. coli 30S ribosomal subunit - Escherichia coli
3i1m, 3i1o, 3df1, 3df3, 2vho, 2vhp, 2avy, 2aw7, 1pnx - E. coli 30S ribosomal subunit+16S RRNA
1i94, 1fka, 3uxs, 3uxt, 4dr1 - Tt30S ribosomal subunit+16S RRNA
4duy, 4duz, 4dv0, 4dv1, 4dv2, 4dv3, 4dv4, 4dv5, 4dv6, 4dv7 - Tt30S ribosomal subunit+16S RRNA (mutant)
4dr4, 4b3m, 4b3r, 4b3s, 4b3t - Tt30S ribosomal subunit+16S RRNA + mRNA
1p87 - E. coli 30S ribosomal subunit+16S RRNA – Cryo-EM
3bbn - Spinacia oleracea (spinach) 30S ribosomal subunit+16S RRNA – Cryo-EM – spinach
30S subunit + chain release factor
3mr8, 3ms0 – Tt30S ribosomal subunit+THX+chain release factor 1+P-site tRNA+mRNA+16S RRNA
3d5a 3d5c - Tt30S ribosomal subunit+THX+chain release factor 1+P-site tRNA+E-site tRNA+mRNA +16S RRNA
3zvo - Tt30S ribosomal subunit+THX+P-site tRNA Met +mRNA +16S RRNA+chain release factor 3
2b64 - Tt30S ribosomal subunit+THX+P-site tRNA Phe+E-site tRNA Phe+mRNA +16S RRNA+chain release factor 1
2b9m - Tt30S ribosomal subunit+THX+P-site tRNA Phe+E-site tRNA Phe+mRNA +16S RRNA+chain release factor 2
2x9r, 2x9t, 2wh1, 2wh3 - Tt30S ribosomal subunit+THX+chain release factor 2+P-site tRNA+mRNA +16S RRNA
3f1e, 3f1g - Tt30S ribosomal subunit+THX+chain release factor 2+P-site tRNA+E-site tRNA +16S RRNA
4kfh, 4kfk - Tt30S ribosomal subunit+16S RRNA+ RF-2 + mRNA+ P-site tRNA fMet
30S subunit +tRNA+mRNA
2hgi - Tt30S ribosomal subunit+16S RRNA+tRNA Phe+tRNA fMet
4l6k, 4l6m - Tt30S ribosomal subunit+16S RRNA+tRNA Phe+tRNA
2hgp - Tt30S ribosomal subunit+16S RRNA+tRNA Phe+mRNA
3t1h, 3t1y - Tt30S ribosomal subunit+16S RRNA+tRNA Lys +mRNA
3tvf, 3tvg, 3uyd, 3uyf - Tt30S ribosomal subunit+16S RRNA+tRNA Leu + tRNA fMet + mRNA
3zn7, 3znd - Tt30S ribosomal subunit+16S RRNA+A-site tRNA Ile agmatidine + E-site tRNA Ile agmatidine + mRNA
3uz6, 3uz7, 3uzg, 3uzi - Tt30S ribosomal subunit+16S RRNA+tRNA Tyr + tRNA fMet + mRNA
2i2p, 2i2u - E. coli 30S ribosomal subunit+16S RRNA+tRNA Phe+mRNA
2hgr, 3v6u, 3v6v, 4ej9, 4eja - Tt30S ribosomal subunit+16S RRNA+tRNA Phe+tRNA fMet+mRNA
1yl4 – Tt30S ribosomal subunit+ tRNA Phe+16S RRNA+THRS mRNA operator
1pns - E. coli 30S ribosomal subunit+ tRNA Phe+16S RRNA+mRNA
3j13 - E. coli 30S ribosomal subunit+ P-site tRNA +16S RRNA+mRNA – Cryo-EM
3j0u, 3j0v, 3j0x, 3j0z, 3j10, 3j20 - Ec30S ribosomal subunit+ A-site tRNA + P-site tRNA +16S RRNA+mRNA – Cryo-EM
1xnq, 1xnr - Tt30S ribosomal subunit+THX+mRNA+tRNA anticodon+16S RRNA
4gkj, 4gkk - Tt30S ribosomal subunit +16S RRNA +THX + mRNA + tRNA Met
4jv5, 4jya, 4k0k, 4k0l - Tt30S ribosomal subunit +16S RRNA +THX + mRNA + ASL-tRNA
30S subunit +A-site tRNA
2uxd, 2uxc - Tt30S ribosomal subunit+THX+A-site mRNA CGGG+tRNA anticodon+16S RRNA
1n32, 1n33 - Tt30S ribosomal subunit+THX+A-site mRNA fragment+tRNA anticodon+16S RRNA
1n34 - Tt30S ribosomal subunit+THX+A-site mRNA fragment +16S RRNA
1xmo, 1xmq - Tt30S ribosomal subunit+THX+A-site mRNA+tRNA anticodon+16S RRNA
2uxb - Tt30S ribosomal subunit+THX+A-site mRNA GGGU+tRNA anticodon+16S RRNA
30S subunit+P-site tRNA
3i8g - Tt30S ribosomal subunit+P-site tRNA+mRNA +16S RRNA
3i8h, 3i9b, 3i9d - Tt30S ribosomal subunit+THX+P-site tRNA+mRNA +16S RRNA
1ibk - Tt30S ribosomal subunit+THX+P-site mRNA fragment +16S RRNA
2wwl - E. coli 30S ribosomal subunit+Poly-Ala chain+P-site tRNA+mRNA +16S RRNA
3i1q - E. coli30S ribosomal subunit+P-site tRNA hairpin+mRNA
3i1s, 3i1z, 3i21 - Ec30S ribosomal subunit+P-site tRNA hairpin+mRNA +16S RNA
2om7 – TtRPS2+TtRPS12+TtRPL1+ P-site tRNA+16S RRNA fragment+23S RRNA fragment
30S subunit+A-site tRNA+P-site tRNA
1ibl, 1ibm - Tt30S ribosomal subunit+THX+A-site mRNA fragment+P-site mRNA fragment+tRNA anticodon+16S RRNA
30S subunit+P-site tRNA+E-site tRNA
2ow8 - Tt30S ribosomal subunit+THX+P-site tRNA Phe+E-site tRNA+mRNA +16S RRNA
2b9o - Tt30S ribosomal subunit+THX+P-site tRNA Phe+E-site tRNA Phe+mRNA +16S RRNA
2qnh - Tt30S ribosomal subunit+THX+P-site tRNA+E-site tRNA+mRNA +16S RRNA
2wdg, 2wdh, 2wdk, 2wdm - Tt30S ribosomal subunit+THX+P-site tRNA+E-site tRNA+mRNA +16S RRNA+tRNA Phe
30S subunit+A-site tRNA+P-site tRNA+E-site tRNA
2gy9, 2gyb - E. coli 30S ribosomal subunit+P-site tRNA+A-site tRNA+E-site tRNA+mRNA +16S RRNA – Cryo-EM
1jgo, 1jgp, 1jgq, 1gix - Tt30S ribosomal subunit+P-site tRNA+A-site tRNA+E-site tRNA+tRNA Phe+mRNA +16S RRNA
4k0p - Tt30S ribosomal subunit+P-site tRNA+A-site tRNA+E-site tRNA +mRNA +16S RRNA
3e1a, 3e1c - 'E. coli 30S ribosomal subunit+P-site tRNA+A-site tRNA+E-site tRNA+mRNA +16S RRNA
30S subunit + antibiotics
1i95, 1i97, 2hhh, 2f4v, 3oge, 3ogy, 3ohc, 3ohd, 3ohy, 3oi0, 3oi2, 3oi4, 4dr3 - Tt30S ribosomal subunit+16S RRNA+antibiotic
1hnx, 1hnw, 1hnz, 1fjg, 4aqy, 4dr5, 4dr6, 4dr7, 4khp - Tt30S ribosomal subunit+16S RRNA+mRNA fragment+antibiotic
2qbb, 2qb9, 1vs5, 1vs7 , 2qan, 2qal, 2qou, 2qow, 2qoy, 2qp0, 2z4k, 2z4m, 3oaq, 3oar, 3ofa, 3ofb, 3ofo, 3ofp, 3ofx, 3ofy, 3or9, 3ora - Ec30S ribosomal subunit+16S RRNA+antibiotic
4gaq, 4gas - E. coli 30S ribosomal subunit+16S RRNA+ mRNA + antibiotic
3sfs - Ec30S ribosomal subunit+16S RRNA+ mRNA + RF-3 + antibiotic
2j00, 2j02 - Tt30S ribosomal subunit+16S RRNA+paromomycin+P-site tRNA fMet+E-site tRNA Phe+mRNA
3knl, 3knm, 3knn, 3kno, 3knj, 3knh - Tt30S ribosomal subunit+P-site tRNA+A-site tRNA+E-site tRNA+mRNA +16S RRNA+ antibiotic
3uz3, 3uz4 - Tt30S ribosomal subunit+16S RRNA+tRNA Leu + tRNA fMet + mRNA + paromomycin
4g5k, 4g5m, 4g5t, 4g5v - Tt30S ribosomal subunit+16S RRNA + tRNA fMet + mRNA + antibiotics
3uzl, 3uzm - Tt30S ribosomal subunit+16S RRNA+tRNA Tyr + tRNA fMet + mRNA + paromomycin
30S subunit + ribosome recycling factor
2qbd, 2qbf -E. coli30S ribosomal subunit+16S RRNA+ribosome recycling factor
3r8n, 3r8o, 4gd1, 4gd2 - Ec30S ribosomal subunit+16S RRNA+ribosome recycling factor + mRNA + tRNA
2qbh, 2qbj - E. coli 30S ribosomal subunit+16S RRNA+ribosome recycling factor+gentamicin
2v46, 2v48 - Tt30S ribosomal subunit+16S RRNA+ribosome recycling factor+P-site tRNA Phe+mRNA+tRNA fMet
30S subunit + elongation factor
2wri, 2wrk - Tt30S ribosomal subunit+THX+P-site tRNA+mRNA +16S RRNA+elongation factor G
2wrn, 2wrq - Tt30S ribosomal subunit+THX+A-site tRNA+mRNA +16S RRNA+elongation factor TU-4
3fic - Tt30S ribosomal subunit+THX+A-site tRNA+P-site tRNA+E-site tRNA+mRNA codon+16S RRNA+elongation factor TU-A
4abr - Tt30S ribosomal subunit+THX + E/P-site tRNA fMet +mRNA codon+16S RRNA+elongation factor TU
2y0u, 2y0w, 2y0y, 2y12, 2y10, 2y18, 2y14, 2y16 - Tt30S ribosomal subunit+THX+A-site tRNA+E-site tRNA+mRNA codon+16S RRNA+elongation factor TU
3fih - E. coli 30S ribosomal subunit+A-site tRNA Phe+P-site tRNA+mRNA +16S RRNA+elongation factor TU
3izv - E. coli 30S ribosomal subunit+A/T-site tRNA Phe +16S RRNA+elongation factor TU
3j18 - E. coli 30S ribosomal subunit+A/T-site tRNA Phe +16S RRNA+ mRNA + SSRA-binding protein + formyl-Met specific initiator tRNA + elongation factor G – Cryo-EM
3izw - E. coli 30S ribosomal subunit+A-site tRNA Phe +mRNA +16S RRNA+elongation factor TU
3huw, 3huy - Tt30S ribosomal subunit+THX+tRNA-Met+mRNA +16S RRNA+elongation factor P
4b8f, 4b8h - Tt30S ribosomal subunit+THX+RNA+mRNA +16S RRNA+elongation factor G
4btc, 4kdg, 4kdj - Tt30S ribosomal subunit+THX+RNA +16S RRNA+elongation factor G
4juw - Tt30S ribosomal subunit+THX+ tRNA Phe +16S RRNA + mRNA +elongation factor G
4kbt, 4kbv, 4kcy, 4kd0, 4kd8, 4kda - Tt30S ribosomal subunit+THX+ tRNA Met +16S RRNA + mRNA + viomycin + elongation factor G
4kiy, 4kj0, 4kj2, 4kj4, 4kj6, 4kj8, 4kja, 4kjc - E. coli 30S ribosomal subunit +16S RRNA + viomycin + elongation factor G
30S subunit + translation initiation factor
1hr0 - Tt30S ribosomal subunit+THX+IF+16S RRNA
1i96 - Tt30S ribosomal subunit+THX+IF3+16S RRNA
30S subunit + various proteins
3kiq, 3kis, 3kiu, 3kix - Tt30S ribosomal subunit+toxin RelE+16S RRNA
2xfz, 2xg1 - Tt30S ribosomal subunit+colicin-E3 fragment+16S RRNA+mRNA+E-site tRNA+THX
1voq, 1vos , 1vov, 1vox, 1voz - Ec30S ribosomal subunit+protein Y+16S RRNA
3j36 - E. coli 30S ribosomal subunit+ tetracycline resistance protein +16S RRNA + mRNA + P-tRNA – Cryo-EM
1x18 – TtRPS2+TtRPS7+TtRPS11+TtRPS18+GTP-binding protein ERA+RNA fragments
4dh9, 4dhb - Tt30S ribosomal subunit +16S RRNA+mRNA+P-site tRNA fMet +THX + YAEJ
3v22, 3v24, 3v26, 3v28 - Tt30S ribosomal subunit +16S RRNA +THX + modulation factor
3v2c, 3v2e - Tt30S ribosomal subunit +16S RRNA +THX + ribosome-associated inhibitor
3j00 – E. coli RPS2 + 16S RRNA + FTSQ + apolipoprotein A-I
2ykr - E. coli RPS2 + 16S RRNA + GMPPNP + GTPase RSGA
4a2i - E. coli RPS2 + 16S RRNA + GTPase RSGA – Cryo EM
3uoq - E. coli RPS2 + 16S RRNA + mRNA + peptide chain release factor
4adv - E. coli RPS2 + 16S RRNA + methyltransferase – Cryo EM
40S ribosomal subunit
3jyv - Tl40S ribosomal subunit+RACK1+S19E+P-site tRNA – Thermomyces lanuginosus
2xzm, 2xzn - Tet40S ribosomal subunit+RACK1 – Tetrahymena thermophila
1s1h - Saccharomyces cerevisiae (yeast) 40S ribosomal subunit+18S RRNA+elongation factor 2 – Cryo-EM – yeast
3izb - Saccharomyces cerevisiae (yeast) 40S ribosomal subunit+ RACK1 – Cryo-EM
3o2z, 3o30 - Saccharomyces cerevisiae (yeast) 40S ribosomal subunit+ RACK1
3u5c, 3u5g - Saccharomyces cerevisiae (yeast) 40S ribosomal subunit+ RACK1 + suppressor protein SMT1
3iz6 - w40S ribosomal subunit+RACK1 – wheat
3j38 - Dm40S ribosomal subunit + EF-2 + guanine nucleotide-binding protein – Drosophila melanogaster – Cryo-EM
3j3a - h40S ribosomal subunit + EF-2 + guanine nucleotide-binding protein – human – Cryo-EM
4kzx - r40S ribosomal subunit+ RACK1 + EIF1 – rabbit – Cryo-EM
4kzy - r40S ribosomal subunit+ RACK1 + EIF1 + EIF1A – Cryo-EM
4kzz - r40S ribosomal subunit+ RACK1 + EIF1A + initiator tRNA – Cryo-EM
2zkq – d40S ribosomal subunit+RACK1+RRNA fragment – dog - Cryo-EM
3zey - Tb40S ribosomal subunit – Trypanosoma brucei – Cryo-EM
4bpe, 4bpn, 4bpo, 4bpp - r40S ribosomal subunit+ 18SRRNA + EIF1 + EIF1A
50S subunit+RNA
2x9s, 2x9u, 3kni, 3knk, 3knm, 3kno, 3hux, 3huz, 2wdi, 2wdj 2wdl 1vsp, 2v47 , 2v49, 1vsa, 3pyo, 3pyr, 3pyt, 3pyv, 3v6w, 3v6x, 3zne, 4btd, 4ejb, 4ejc, 4k0m, 4k0q, 2wrj, 2wrl, 2wro, 2wrr, 2wh2, 2wh4, 2hgj, 2hgq, 2hgu,2j01, 2j03, 1yl3, 3i8i, 3f1f, 3f1h, 2b66, 2b9n, 2b9p, 1giy, 2xqe, 2y0v, 2y0x, 2y0z, 2y11, 2y13, 2y15, 2y17, 2y19, 3zvp, 4abs, 4b8g, 4b8i, 4jux, 4kbu, 4kbw, 4kcz, 4kd2, 4kd9, 4kdb, 4kdh, 4kdk, 4kfi, 4kfl - Tt50S subunit+5S RRNA+23S RRNA
2xg0, 2xg2, 3kir, 3kit, 3kiw, 3kiy – Tt50S subunit+RNA fragments
3fin, 2xtg, 2xux - Tt50S subunit+5S RRNA+23S RRNA – Cryo-EM
2wwq – E. coli 50S subunit+5S RRNA+23S RRNA+mRNA+P-site tRNA
3i1n, 3i1p, 3i1r, 3i1t, 3i20, 3i22, 3e1b, 3e1d, 3df2, 3df4, 2vhn, 2qov, 2qox, 2i2t, 2i2v, 1vs6, 1vs8, 2aw4, 2awb, 3ofd, 3og0, 3oas, 3oat, 3uos, 3r8s, 3r8t, 3j37, 4kix, 4kiz, 4kj1, 4kj3, 4kj5, 4kj7, 4kj9, 4kjb - Ec50S subunit+5S RRNA+23S RRNA
3fik, 2gya, 2gyc, 1p85, 1p86, 3izt, 3izu, 3j0t, 3j0w, 3j0y, 3j11, 3j12, 3j14, 3j19 - Ec50S subunit+5S RRNA+23S RRNA – Cryo-EM
3kcr - E. coli 50S subunit+5S RRNA+23S RRNA+preprotein translocase
3bbo - s50S subunit+5S RRNA+23S RRNA+4.8S RRNA – Cryo-EM
2zjq, 2zjr, 1nkw - Dr50S subunit+5S RRNA+23S RRNA – Deinococcus radiodurans
4hub,4i4m,2qa4, 3cc2, 1s72, 1kqs, 1qvg, 1jj2, 1ffk - Hm 50S subunit+5S RRNA+23S RRNA –'Haloarcula marismortui
3cc7, 3cce, 3ccj, 3ccl, 3ccm, 3ccq, 3ccr, 3ccs, 3ccu, 3ccv - Hm 50S subunit+5S RRNA+23S RRNA (mutant) - 'Haloarcula marismortui
1yj9 - Hm50S subunit (mutant)+5S RRNA+23S RRNA
1qvf- Hm50S subunit+5S RRNA+23S RRNA + deacylated tRNA minihelix
1q86 - Hm50S subunit+5S RRNA+23S RRNA+CCA-Phe-caproic acid-biotin
3cma, 3cme, 1vq8, 1vq9, 1m90 - Hm50S subunit+5S RRNA+23S RRNA+CCA+CCA-Phe-CAP-BIO
1vq4, 1vq5, 1vq7, 1vql, 1vqm, 1vqp – Hm50S subunit+5S RRNA+23S RRNA+transition state analog
1vq6, 1vqk, 1vqn – Hm50S subunit+5S RRNA+23S RRNA+ c-hpmn+CCA-Phe-caproic acid-biotin
1vqo – Hm50S subunit+5S RRNA+23S RRNA+ CCPMN
3iy9 – 50S subunit – Leishmania taretolae
2ftc – 50S subunit+5S RRNA+23S RRNA – bovine - Cryo_EM
3j21 – 50S subunit + P0 + LX – Pyrococcus furiosus – Cryo EM
3j3v, 3j3w - 50S subunit+5S RRNA+23S RRNA – Bacillus subtilis
50S subunit + antibiotics
3dll, 2zjp, 3cf5, 1xbp, 1sm1, 1nwx, 1nwy, 3pio, 3pip - Dr50S subunit+5S RRNA+23S RRNA+general stress protein Ctc+ antibiotic
4io9, 4ioa, 4ioc - Dr50S subunit+5S RRNA+23S RRNA+ antibiotics
2qba, 2qbc, 4gar, 4gau, 2qam, 2qao, 2qoz, 2qp1, 3ofc, 3ofz, 3ofq, 3ofr, 1vt2, 3orb, 4l6j, 4l6l - Ec50S subunit+5S RRNA+23S RRNA+ antibiotics
3i55 3i56, 3g4s, 3g4e, 3g71, 2qex, 3cc4, 3cd6, 1yhq, 1yi2, 1yij, 1yjn, 1yjw, 2otj, 2otl, 1yit, 1k73, 1kc8, 1k8a, 1k9m, 1kd1, 1m1k, 3cpw, 1yit, 1q7y, 1q81, 1q82, 1n8r, 1nji, 3cxc - Hm50S subunit+5S RRNA+23S RRNA + antibiotics
3oh5, 3oh7, 3ohj, 3ohk, 3ohz, 3oi1, 3oi3, 3oi5 - Tt50S subunit+5S RRNA+23S RRNA+antibiotic
60S subunit
3jyw - 60S subunit – Thermomyces lanuginosus – Cryo-EM
1s1i, 1s1h - Saccharomyces cerevisiae (yeast) 60S ribosomal subunit+ 5.8S RRNA+ 5S RRNA – Cryo-EM
3izs - Saccharomyces cerevisiae (yeast) 60S subunit – Cryo-EM
3u5e, 3u5i - Saccharomyces cerevisiae (yeast) 60S subunit
3o58, 3o5h - Saccharomyces cerevisiae (yeast) 60S ribosomal subunit+ 5.8S RRNA+ 5S RRNA + 25S RRNA
3izr, 3izt, 3izu, 3izs - w60S subunit
3j39 – Dm60S subunit – Cryo-EM
3j3b – h60S subunit – Cryo-EM
4a17, 4a1a, 4a1c, 4a1e - Tet60S ribosomal subunit + 5S RRNA + 5.8S RRNA
3zf7 - Tb60S subunit - Cryo EM
large + small ribosomal subunit
1ml5 - E. coli 50S ribosomal subunit+30S ribosomal subunit+THX+chain release factor 2+P-site tRNA+tRNA Phe+mRNA fragment+23S RRNA+5S RRNA+16S RRNA – Cryo-EM
2qan, 2qal, 2qou, 2qow, 2qoy, 2qp0 - E. coli 50S ribosomal subunit+30S ribosomal subunit
2zkr - Canis lupus familiaris (dog) 60S ribosomal subunit+30S ribosomal subunit+28S RRNA+5.8S RRNA – Cryo-EM
3j0l - Oryctolagus cuniculus (rabbit) 60S ribosomal subunit+40S ribosomal subunit+RRNA fragments+ mRNA fragments – Cryo-EM
3j0o, 3j0p, 3j0q - Oryctolagus cuniculus (rabbit) 60S ribosomal subunit+40S ribosomal subunit+RRNA fragments+ mRNA fragments + tRNA – Cryo-EM
3u5b, 3u5c, 3u5d, 3u5e, 3u5f, 3u5g, 3u5h, 3u5i, 4v88 - Saccharomyces cerevisiae (yeast) 60S ribosomal subunit+40S ribosomal subunit
1vxu, 1vxv, 1vxw, 3j77, 3j78 - Saccharomyces cerevisiae (yeast) 60S ribosomal subunit+40S ribosomal subunit - rotated ribosome with 1 tRNA
4u3m, 4u56, 4u3n, 4u55, 4u3u, 4u53, 4u4n, 4u4o, 4u4q, 4u4r, 4u4u, 4u52, 4u51, 4u4y, 4u4z, 4u6f, 4u50 - Saccharomyces cerevisiae (yeast) 60S ribosomal subunit+40S ribosomal subunit in complexes with 12 eukaryote-specific and 4 broad-spectrum inhibitors
50S subunit + ribosome releasing factor (RRF)
2qbe, 2qbg, 2qbi, 2qbk, 2z4l, 2z4n - Ec50S subunit+5S RRNA+23S RRNA+RRF
2rdo - E. coli50S subunit+5S RRNA+23S RRNA+EF-G+RRF – Cryo-EM
3j0d - Tt50S subunit+5S RRNA+23S RRNA+RRF – Cryo-EM
50S subunit + various proteins
2vhm - E. coli 50S subunit+5S RRNA+23S RRNA+PDF C-terminal helix
2j28 - E. coli 50S subunit+5S RRNA+23S RRNA+signal recognition particle – Cryo-EM
1vor, 1vou, 1vow, 1voy, 1vp0, 1pnu, 1pny - Ec50S subunit+5S RRNA+23S RRNA+general stress protein Ctc
3j01 - E. coli 50S subunit+5S RRNA+23S RRNA + SECYE – Cryo-EM
1w2b - Hm50S subunit+5S RRNA+23S RRNA+trigger factor N-terminal
60S subunit + various proteins
4a18, 4a19, 4a1b, 4a1d - Tet60S subunit+ 26S RRNA+ translation initiation factor 6
3izs – Saccharomyces cerevisiae (yeast) 60S subunit + P0 + P1 + P2 - Cryo EM
3u5i – Saccharomyces cerevisiae (yeast) 60S subunit + P0
4b6a – Saccharomyces cerevisiae (yeast) 60S subunit + P0 + P1 + P2 + ARX1 - Cryo EM
3o5h – Saccharomyces cerevisiae (yeast) 60S subunit + 5S RRNA + 5.8S RRNA + 25S RRNA + P0
3j39 – Dm60S subunit + P0 – Drosophila melanogaster - Cryo EM
3j3b – h60S subunit + P0 + P1 + P2 – human - Cryo EM
Proteopedia Page Contributors and Editors (what is this?)
Michal Harel, Wayne Decatur, Joel L. Sussman, Jaime Prilusky, Alexander Berchansky
