This old version of Proteopedia is provided for student assignments while the new version is undergoing repairs. Content and edits done in this old version of Proteopedia after March 1, 2026 will eventually be lost when it is retired in about June of 2026.


Apply for new accounts at the new Proteopedia. Your logins will work in both the old and new versions.


2oyo

From Proteopedia

(Difference between revisions)
Jump to: navigation, search
Line 3: Line 3:
== Structural highlights ==
== Structural highlights ==
<table><tr><td colspan='2'>[[2oyo]] is a 2 chain structure with sequence from [http://en.wikipedia.org/wiki/Deinococcus_geothermalis Deinococcus geothermalis]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2OYO OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2OYO FirstGlance]. <br>
<table><tr><td colspan='2'>[[2oyo]] is a 2 chain structure with sequence from [http://en.wikipedia.org/wiki/Deinococcus_geothermalis Deinococcus geothermalis]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2OYO OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2OYO FirstGlance]. <br>
-
</td></tr><tr><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=MPD:(4S)-2-METHYL-2,4-PENTANEDIOL'>MPD</scene><br>
+
</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=MPD:(4S)-2-METHYL-2,4-PENTANEDIOL'>MPD</scene></td></tr>
-
<tr><td class="sblockLbl"><b>[[Non-Standard_Residue|NonStd Res:]]</b></td><td class="sblockDat"><scene name='pdbligand=MSE:SELENOMETHIONINE'>MSE</scene></td></tr>
+
<tr id='NonStdRes'><td class="sblockLbl"><b>[[Non-Standard_Residue|NonStd Res:]]</b></td><td class="sblockDat"><scene name='pdbligand=MSE:SELENOMETHIONINE'>MSE</scene></td></tr>
-
<tr><td class="sblockLbl"><b>[[Gene|Gene:]]</b></td><td class="sblockDat">YP_604910.1, Dgeo_1446 ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=68909 Deinococcus geothermalis])</td></tr>
+
<tr id='gene'><td class="sblockLbl"><b>[[Gene|Gene:]]</b></td><td class="sblockDat">YP_604910.1, Dgeo_1446 ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=68909 Deinococcus geothermalis])</td></tr>
-
<tr><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2oyo FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2oyo OCA], [http://www.rcsb.org/pdb/explore.do?structureId=2oyo RCSB], [http://www.ebi.ac.uk/pdbsum/2oyo PDBsum], [http://www.topsan.org/Proteins/JCSG/2oyo TOPSAN]</span></td></tr>
+
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2oyo FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2oyo OCA], [http://www.rcsb.org/pdb/explore.do?structureId=2oyo RCSB], [http://www.ebi.ac.uk/pdbsum/2oyo PDBsum], [http://www.topsan.org/Proteins/JCSG/2oyo TOPSAN]</span></td></tr>
-
<table>
+
</table>
== Evolutionary Conservation ==
== Evolutionary Conservation ==
[[Image:Consurf_key_small.gif|200px|right]]
[[Image:Consurf_key_small.gif|200px|right]]
Line 21: Line 21:
</StructureSection>
</StructureSection>
[[Category: Deinococcus geothermalis]]
[[Category: Deinococcus geothermalis]]
-
[[Category: JCSG, Joint Center for Structural Genomics.]]
+
[[Category: Structural genomic]]
[[Category: Carboxymuconolactone decarboxylase family]]
[[Category: Carboxymuconolactone decarboxylase family]]
[[Category: Jcsg]]
[[Category: Jcsg]]
-
[[Category: Joint center for structural genomic]]
 
[[Category: Oxidoreductase]]
[[Category: Oxidoreductase]]
-
[[Category: Protein structure initiative]]
+
[[Category: PSI, Protein structure initiative]]
-
[[Category: Psi-2]]
+
-
[[Category: Structural genomic]]
+
[[Category: Uncharacterised peroxidase-related]]
[[Category: Uncharacterised peroxidase-related]]
[[Category: Uncharacterized peroxidase-related]]
[[Category: Uncharacterized peroxidase-related]]
[[Category: Yp_604910 1]]
[[Category: Yp_604910 1]]

Revision as of 14:29, 19 January 2015

Crystal structure of Uncharacterized peroxidase-related protein (YP_604910.1) from Deinococcus geothermalis DSM 11300 at 1.51 A resolution

2oyo, resolution 1.51Å

Drag the structure with the mouse to rotate

Proteopedia Page Contributors and Editors (what is this?)

OCA

Personal tools