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2p3e
From Proteopedia
(Difference between revisions)
| Line 3: | Line 3: | ||
== Structural highlights == | == Structural highlights == | ||
<table><tr><td colspan='2'>[[2p3e]] is a 2 chain structure with sequence from [http://en.wikipedia.org/wiki/Aquifex_aeolicus Aquifex aeolicus]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2P3E OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2P3E FirstGlance]. <br> | <table><tr><td colspan='2'>[[2p3e]] is a 2 chain structure with sequence from [http://en.wikipedia.org/wiki/Aquifex_aeolicus Aquifex aeolicus]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2P3E OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2P3E FirstGlance]. <br> | ||
| - | </td></tr><tr><td class="sblockLbl"><b>[[Related_structure|Related:]]</b></td><td class="sblockDat">[[1twi|1twi]]</td></tr> | + | </td></tr><tr id='related'><td class="sblockLbl"><b>[[Related_structure|Related:]]</b></td><td class="sblockDat">[[1twi|1twi]]</td></tr> |
| - | <tr><td class="sblockLbl"><b>[[Gene|Gene:]]</b></td><td class="sblockDat">lysA, aq_1208 ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=63363 Aquifex aeolicus])</td></tr> | + | <tr id='gene'><td class="sblockLbl"><b>[[Gene|Gene:]]</b></td><td class="sblockDat">lysA, aq_1208 ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=63363 Aquifex aeolicus])</td></tr> |
| - | <tr><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[http://en.wikipedia.org/wiki/Diaminopimelate_decarboxylase Diaminopimelate decarboxylase], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=4.1.1.20 4.1.1.20] </span></td></tr> | + | <tr id='activity'><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[http://en.wikipedia.org/wiki/Diaminopimelate_decarboxylase Diaminopimelate decarboxylase], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=4.1.1.20 4.1.1.20] </span></td></tr> |
| - | <tr><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2p3e FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2p3e OCA], [http://www.rcsb.org/pdb/explore.do?structureId=2p3e RCSB], [http://www.ebi.ac.uk/pdbsum/2p3e PDBsum], [http://www.topsan.org/Proteins/RSGI/2p3e TOPSAN]</span></td></tr> | + | <tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2p3e FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2p3e OCA], [http://www.rcsb.org/pdb/explore.do?structureId=2p3e RCSB], [http://www.ebi.ac.uk/pdbsum/2p3e PDBsum], [http://www.topsan.org/Proteins/RSGI/2p3e TOPSAN]</span></td></tr> |
| - | <table> | + | </table> |
| + | == Function == | ||
| + | [[http://www.uniprot.org/uniprot/DCDA_AQUAE DCDA_AQUAE]] Specifically catalyzes the decarboxylation of meso-diaminopimelate (meso-DAP) to L-lysine (By similarity).[HAMAP-Rule:MF_02120] | ||
== Evolutionary Conservation == | == Evolutionary Conservation == | ||
[[Image:Consurf_key_small.gif|200px|right]] | [[Image:Consurf_key_small.gif|200px|right]] | ||
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[[Category: Aquifex aeolicus]] | [[Category: Aquifex aeolicus]] | ||
[[Category: Diaminopimelate decarboxylase]] | [[Category: Diaminopimelate decarboxylase]] | ||
| - | [[Category: Chen, L | + | [[Category: Chen, L]] |
| - | [[Category: Ebihara, A | + | [[Category: Ebihara, A]] |
| - | [[Category: Fu, Z-Q | + | [[Category: Fu, Z-Q]] |
| - | [[Category: II, J T.Swindell | + | [[Category: II, J T.Swindell]] |
| - | [[Category: Kuramitsu, S | + | [[Category: Kuramitsu, S]] |
| - | [[Category: | + | [[Category: Structural genomic]] |
| - | [[Category: Rose, J P | + | [[Category: Rose, J P]] |
| - | + | [[Category: Shinkai, A]] | |
| - | [[Category: Shinkai, A | + | [[Category: Wang, B-C]] |
| - | [[Category: Wang, B-C | + | [[Category: Yokoyama, S]] |
| - | [[Category: Yokoyama, S | + | [[Category: Zhu, J]] |
| - | [[Category: Zhu, J | + | |
[[Category: Aq1208]] | [[Category: Aq1208]] | ||
| - | [[Category: Aquifex aeolicus]] | ||
[[Category: Department of biological sciences osaka university]] | [[Category: Department of biological sciences osaka university]] | ||
[[Category: Department of biophysics and biochemistry university of tokyo]] | [[Category: Department of biophysics and biochemistry university of tokyo]] | ||
[[Category: Lyase]] | [[Category: Lyase]] | ||
| - | [[Category: Protein structure initiative | + | [[Category: PSI, Protein structure initiative]] |
| - | + | ||
[[Category: Riken genomic sciences center]] | [[Category: Riken genomic sciences center]] | ||
[[Category: Riken spring-8 center]] | [[Category: Riken spring-8 center]] | ||
| - | [[Category: Riken structural genomics/proteomics initiative]] | ||
[[Category: Rsgi]] | [[Category: Rsgi]] | ||
[[Category: Secsg]] | [[Category: Secsg]] | ||
| - | [[Category: Southeast collaboratory for structural genomic]] | ||
Revision as of 12:03, 25 December 2014
Crystal structure of AQ1208 from Aquifex aeolicus
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Categories: Aquifex aeolicus | Diaminopimelate decarboxylase | Chen, L | Ebihara, A | Fu, Z-Q | II, J T.Swindell | Kuramitsu, S | Structural genomic | Rose, J P | Shinkai, A | Wang, B-C | Yokoyama, S | Zhu, J | Aq1208 | Department of biological sciences osaka university | Department of biophysics and biochemistry university of tokyo | Lyase | PSI, Protein structure initiative | Riken genomic sciences center | Riken spring-8 center | Rsgi | Secsg
