This old version of Proteopedia is provided for student assignments while the new version is undergoing repairs. Content and edits done in this old version of Proteopedia after March 1, 2026 will eventually be lost when it is retired in about June of 2026.
Apply for new accounts at the new Proteopedia. Your logins will work in both the old and new versions.
3bom
From Proteopedia
(Difference between revisions)
| Line 3: | Line 3: | ||
== Structural highlights == | == Structural highlights == | ||
<table><tr><td colspan='2'>[[3bom]] is a 4 chain structure with sequence from [http://en.wikipedia.org/wiki/Oncorhynchus_mykiss Oncorhynchus mykiss]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3BOM OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=3BOM FirstGlance]. <br> | <table><tr><td colspan='2'>[[3bom]] is a 4 chain structure with sequence from [http://en.wikipedia.org/wiki/Oncorhynchus_mykiss Oncorhynchus mykiss]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3BOM OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=3BOM FirstGlance]. <br> | ||
| - | </td></tr><tr><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=EDO:1,2-ETHANEDIOL'>EDO</scene>, <scene name='pdbligand=HEM:PROTOPORPHYRIN+IX+CONTAINING+FE'>HEM</scene>< | + | </td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=EDO:1,2-ETHANEDIOL'>EDO</scene>, <scene name='pdbligand=HEM:PROTOPORPHYRIN+IX+CONTAINING+FE'>HEM</scene></td></tr> |
| - | <tr><td class="sblockLbl"><b>[[Non-Standard_Residue|NonStd Res:]]</b></td><td class="sblockDat"><scene name='pdbligand=ACE:ACETYL+GROUP'>ACE</scene></td></tr> | + | <tr id='NonStdRes'><td class="sblockLbl"><b>[[Non-Standard_Residue|NonStd Res:]]</b></td><td class="sblockDat"><scene name='pdbligand=ACE:ACETYL+GROUP'>ACE</scene></td></tr> |
| - | <tr><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=3bom FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3bom OCA], [http://www.rcsb.org/pdb/explore.do?structureId=3bom RCSB], [http://www.ebi.ac.uk/pdbsum/3bom PDBsum]</span></td></tr> | + | <tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=3bom FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3bom OCA], [http://www.rcsb.org/pdb/explore.do?structureId=3bom RCSB], [http://www.ebi.ac.uk/pdbsum/3bom PDBsum]</span></td></tr> |
| - | <table> | + | </table> |
| + | == Function == | ||
| + | [[http://www.uniprot.org/uniprot/HBA4_ONCMY HBA4_ONCMY]] Involved in oxygen transport from gills to the various peripheral tissues. [[http://www.uniprot.org/uniprot/HBB4_ONCMY HBB4_ONCMY]] Involved in oxygen transport from gills to the various peripheral tissues. | ||
== Evolutionary Conservation == | == Evolutionary Conservation == | ||
[[Image:Consurf_key_small.gif|200px|right]] | [[Image:Consurf_key_small.gif|200px|right]] | ||
| Line 23: | Line 25: | ||
</StructureSection> | </StructureSection> | ||
[[Category: Oncorhynchus mykiss]] | [[Category: Oncorhynchus mykiss]] | ||
| - | [[Category: Bingman, C A | + | [[Category: Bingman, C A]] |
| - | [[Category: Bitto, E | + | [[Category: Bitto, E]] |
| - | [[Category: | + | [[Category: Structural genomic]] |
| - | [[Category: IV, R Aranda | + | [[Category: IV, R Aranda]] |
| - | [[Category: Phillips, G N | + | [[Category: Phillips, G N]] |
| - | [[Category: Richards, M | + | [[Category: Richards, M]] |
| - | [[Category: Wesenberg, G E | + | [[Category: Wesenberg, G E]] |
| - | + | ||
[[Category: Cesg]] | [[Category: Cesg]] | ||
[[Category: Fish hemoglobin]] | [[Category: Fish hemoglobin]] | ||
| Line 39: | Line 40: | ||
[[Category: Oxygen storage/transport]] | [[Category: Oxygen storage/transport]] | ||
[[Category: Oxygen transport]] | [[Category: Oxygen transport]] | ||
| - | [[Category: Protein structure initiative | + | [[Category: PSI, Protein structure initiative]] |
| - | + | ||
| - | + | ||
[[Category: Transport]] | [[Category: Transport]] | ||
Revision as of 10:57, 25 December 2014
Crystal structure of trout hemoglobin at 1.35 Angstrom resolution
| |||||||||||
Categories: Oncorhynchus mykiss | Bingman, C A | Bitto, E | Structural genomic | IV, R Aranda | Phillips, G N | Richards, M | Wesenberg, G E | Cesg | Fish hemoglobin | Heme | Iron | Metal-binding | Oxygen storage-transport complex | Oxygen storage/transport | Oxygen transport | PSI, Protein structure initiative | Transport
