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3ahg
From Proteopedia
(Difference between revisions)
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==H64A mutant of Phosphoketolase from Bifidobacterium Breve complexed with a tricyclic ring form of thiamine diphosphate== | ==H64A mutant of Phosphoketolase from Bifidobacterium Breve complexed with a tricyclic ring form of thiamine diphosphate== | ||
<StructureSection load='3ahg' size='340' side='right' caption='[[3ahg]], [[Resolution|resolution]] 1.90Å' scene=''> | <StructureSection load='3ahg' size='340' side='right' caption='[[3ahg]], [[Resolution|resolution]] 1.90Å' scene=''> | ||
== Structural highlights == | == Structural highlights == | ||
| - | <table><tr><td colspan='2'>[[3ahg]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/ | + | <table><tr><td colspan='2'>[[3ahg]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/"bifidobacterium_parvulorum"_reuter_1963 "bifidobacterium parvulorum" reuter 1963]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3AHG OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=3AHG FirstGlance]. <br> |
</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=EDO:1,2-ETHANEDIOL'>EDO</scene>, <scene name='pdbligand=HTD:2-[(9AR)-2,7-DIMETHYL-9A,10-DIHYDRO-5H-PYRIMIDO[4,5-D][1,3]THIAZOLO[3,2-A]PYRIMIDIN-8-YL]ETHYL+TRIHYDROGEN+DIPHOSPHATE'>HTD</scene>, <scene name='pdbligand=MG:MAGNESIUM+ION'>MG</scene>, <scene name='pdbligand=NA:SODIUM+ION'>NA</scene></td></tr> | </td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=EDO:1,2-ETHANEDIOL'>EDO</scene>, <scene name='pdbligand=HTD:2-[(9AR)-2,7-DIMETHYL-9A,10-DIHYDRO-5H-PYRIMIDO[4,5-D][1,3]THIAZOLO[3,2-A]PYRIMIDIN-8-YL]ETHYL+TRIHYDROGEN+DIPHOSPHATE'>HTD</scene>, <scene name='pdbligand=MG:MAGNESIUM+ION'>MG</scene>, <scene name='pdbligand=NA:SODIUM+ION'>NA</scene></td></tr> | ||
<tr id='related'><td class="sblockLbl"><b>[[Related_structure|Related:]]</b></td><td class="sblockDat">[[3ahc|3ahc]], [[3ahd|3ahd]], [[3ahe|3ahe]], [[3ahf|3ahf]], [[3ahh|3ahh]], [[3ahi|3ahi]], [[3ahj|3ahj]]</td></tr> | <tr id='related'><td class="sblockLbl"><b>[[Related_structure|Related:]]</b></td><td class="sblockDat">[[3ahc|3ahc]], [[3ahd|3ahd]], [[3ahe|3ahe]], [[3ahf|3ahf]], [[3ahh|3ahh]], [[3ahi|3ahi]], [[3ahj|3ahj]]</td></tr> | ||
| - | <tr id='gene'><td class="sblockLbl"><b>[[Gene|Gene:]]</b></td><td class="sblockDat">xfp ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=1685 Bifidobacterium | + | <tr id='gene'><td class="sblockLbl"><b>[[Gene|Gene:]]</b></td><td class="sblockDat">xfp ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=1685 "Bifidobacterium parvulorum" Reuter 1963])</td></tr> |
<tr id='activity'><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[http://en.wikipedia.org/wiki/Fructose-6-phosphate_phosphoketolase Fructose-6-phosphate phosphoketolase], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=4.1.2.22 4.1.2.22] </span></td></tr> | <tr id='activity'><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[http://en.wikipedia.org/wiki/Fructose-6-phosphate_phosphoketolase Fructose-6-phosphate phosphoketolase], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=4.1.2.22 4.1.2.22] </span></td></tr> | ||
| - | <tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=3ahg FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3ahg OCA], [http://www.rcsb.org/pdb/explore.do?structureId=3ahg RCSB], [http://www.ebi.ac.uk/pdbsum/3ahg PDBsum]</span></td></tr> | + | <tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=3ahg FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3ahg OCA], [http://pdbe.org/3ahg PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=3ahg RCSB], [http://www.ebi.ac.uk/pdbsum/3ahg PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=3ahg ProSAT]</span></td></tr> |
</table> | </table> | ||
== Evolutionary Conservation == | == Evolutionary Conservation == | ||
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<text>to colour the structure by Evolutionary Conservation</text> | <text>to colour the structure by Evolutionary Conservation</text> | ||
</jmolCheckbox> | </jmolCheckbox> | ||
| - | </jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/ | + | </jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=3ahg ConSurf]. |
<div style="clear:both"></div> | <div style="clear:both"></div> | ||
<div style="background-color:#fffaf0;"> | <div style="background-color:#fffaf0;"> | ||
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From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.<br> | From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.<br> | ||
</div> | </div> | ||
| + | <div class="pdbe-citations 3ahg" style="background-color:#fffaf0;"></div> | ||
== References == | == References == | ||
<references/> | <references/> | ||
__TOC__ | __TOC__ | ||
</StructureSection> | </StructureSection> | ||
| - | [[Category: Bifidobacterium | + | [[Category: Bifidobacterium parvulorum reuter 1963]] |
[[Category: Fructose-6-phosphate phosphoketolase]] | [[Category: Fructose-6-phosphate phosphoketolase]] | ||
[[Category: Ashida, H]] | [[Category: Ashida, H]] | ||
Revision as of 11:09, 11 August 2016
H64A mutant of Phosphoketolase from Bifidobacterium Breve complexed with a tricyclic ring form of thiamine diphosphate
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Categories: Bifidobacterium parvulorum reuter 1963 | Fructose-6-phosphate phosphoketolase | Ashida, H | Fushinobu, S | Katayama, T | Kim, B J | Shoun, H | Suzuki, R | Wakagi, T | Yamamoto, K | Alpha-beta fold | Dihydrothiachromine form of thiamine diphosphate | Homodimer | Lyase | Thiamine diphosphate-dependent enzyme

