User:Jaime.Prilusky/Test/tree

<StructureSection load="1rta" size="350" caption='Ribonuclease A (magenta) complex with thymidilic acid DNA tetramer (pink), [[1rta]]' >

 

'''Ribonuclease''' (RNase) degrades RNA. The endonucleases cleave single or double stranded RNA and include RNase III, A, T1 H and P. Exo-RNases remove terminal nucleotide from the ends of the RNA molecule. They include RNase II D, T, PH, Polynucleotide Phosphorylase (PNPase) and oligoribonuclease (ORNase).


* '''RNase A''' cleaves C or U of single-stranded RNA (ssRNA).

 

 

 

==Active Site of Ribonuclease A==

Ribonuclease A cleaves RNA strands by catalyzing a transphosphorylation reaction where the 2'-OH of the ribose sugar attacks the neighboring phosphate, releasing the ribose on the the other side of the phosphate. This structure shows ribonuclease A (in blue) bound to short DNA strand composed of four thymidines (in pink). Ribonuclease binds tightly to DNA, but since DNA is missing the 2'-OH, ribonuclease does not cleave it. <scene name='Goodsell_Sandbox/Ribonuclease_catalytic_site/2'>Three amino acids</scene> are shown that are important for catalysis. The 3' carbon on the DNA is shown in red--it is the site where the 2'-OH is connected in RNA. The two histidines perform the proton transfers that are needed in the reaction, and the lysine stabilizes the intermediate that is formed as the 2'-OH attacks the phosphate. Ribonuclease cleaves RNA strands best next to cytidine and uridine nucleotides--the reason for this may be seen in a <scene name='Goodsell_Sandbox/Ribonuclease_recognition/2'>spacefilling representation</scene>. Notice that the small pyrimidine base is surrounded by protein atoms. A larger purine base would not fit well in this space.<ref>PMID:1429575</ref>

== 3D Structures of Ribonuclease ==

Updated on {{REVISIONDAY2}}-{{MONTHNAME|{{REVISIONMONTH}}}}-{{REVISIONYEAR}}

{{#tree:id=OrganizedByTopic|openlevels=0|

*RNase I

**[[3mwq]], [[3mwq]], [[3mx8]], [[3i67]], [[3i6f]], [[3i6h]], [[3i6j]], [[3i7w]], [[3eux]], [[3euy]], [[3euz]], [[3ev0]], [[3ev1]], [[3ev2]], [[3ev3]], [[3ev4]], [[3ev5]], [[3ev6]], [[3dh5]], [[2e3w]], [[2g4w]], [[2g4x]], [[2gbq]], [[2blp]], [[2blz]], [[1jvt]], [[1jvv]], [[1js0]], [[1fs3]], [[1kf2]], [[1kf3]], [[1kf4]], [[1kf5]], [[1kf7]], [[1kf8]], [[1aqp]], [[1a2w]], [[1rnw]], [[1rnz]], [[1rno]], [[1rnq]], [[1rbx]], [[1ssc]], [[3srn]], [[4srn]], [[1srn]], [[5rsa]], [[1afu]], [[1bel]], [[1c0b]], [[1c0c]], [[1lsq]], [[1rat]], [[1rbn]], [[1rha]], [[1rhb]], [[1rnx]], [[1rny]], [[1rsm]], [[1xps]], [[1xpt]], [[2g8q]], [[2rat]], [[3mzq]], [[3mzr]], [[3rat]], [[3rn3]], [[4rat]], [[5rat]], [[6rat]], [[7rat]], [[7rsa]], [[8rat]], [[8rsa]], [[9rat]], [[9rsa]], [[3mwr]], [[4ao1]]- bRNase I pancreatic - bovine


**[[3a1r]] - bRNase I pancreatic - neutron


**[[3i7x]], [[3i7y]], [[3fkz]], [[3fl3]], [[3dh6]], [[3di7]], [[3di8]], [[3di9]], [[3dib]], [[3dic]], [[2oqf]], [[3bcm]], [[3bco]], [[3bcp]], [[2nui]], [[2op2]], [[1ymn]], [[1ymr]], [[1ymw]], [[2apq]], [[1izp]], [[1izq]], [[1izr]], [[1kh8]], [[1c8w]], [[1eic]], [[1eid]], [[1eie]], [[1dy5]], [[3rsd]], [[3rsk]], [[1ssa]], [[1ssb]],[[1a5p]], [[1a5q]], [[1c9v]], [[1c9x]], [[3rsp]], [[4rsd]], [[3ql1]], [[3ql2]], [[3rh1]], [[3rid]] - bRNase I pancreatic (mutant)


**[[3lxo]], [[3jw1]], [[3djo]], [[3djp]], [[3djq]], [[3djv]], [[3djx]], [[3dxg]], [[3dxh]], [[2w5g]], [[2w5i]], [[2w5k]], [[2w5l]], [[2w5m]], [[3d6o]], [[3d6p]], [[3d6q]], [[3d7b]], [[3d8y]], [[3d8z]], [[2qca]], [[2g8r]], [[1z6d]], [[1z6s]], [[1u1b]], [[1w4o]], [[1w4p]], [[1w4q]], [[1wbu]], [[1o0f]], [[1jn4]], [[1jvu]], [[1f0v]], [[1ruv]], [[1rnm]], [[1rnn]], [[1rbw]], [[1rca]], [[1rpf]], [[1rpg]], [[1rph]], [[1rbw]], [[1rca]], [[1rpf]], [[1rpg]], [[1rph]], [[1rnc]], [[1rnd]], [[1rob]], [[1rta]], [[1rtb]],[[1afk]], [[1afl]], [[1eos]], [[1eow]], [[1o0h]], [[1o0m]], [[1o0n]], [[1o0o]], [[1qhc]], [[1rcn]]- bRNase I pancreatic + nucleotide

**[[6rsa]] - bRNase I pancreatic + nucleotide - neutron


**[[3fl0]], [[3fl1]], [[4rsk]] - bRNase I pancreatic (mutant) + nucleotide


**[[2xog]], [[2xoi]], [[2q4g]], [[1dfj]], [[4g8v]], [[4g8y]], [[4g90]] - bRNase I pancreatic + inhibitor


**[[1rar]], [[1ras]] - bRNase I pancreatic fluorescent


**[[2p42]], [[2p43]], [[2p44]], [[2p45 ]], [[2p46]], [[2p47]], [[2p48]], [[2p49]], [[2p4a]], [[1bzq]], [[3qsk]] - bRNase I + antibody

**[[3f8g]], [[2e0j]], [[2e0l]], [[2e0m]], [[2e0o]], [[1h8x]], [[1e21]], [[1dza]] - hRNase I pancreatic (mutant) - human


**[[2k11]] - hRNase I pancreatic - NMR


**[[1z7x]] - hRNase I + inhibitor


**[[3ljd]], [[3ln8]], [[2vq8]], [[2vq9]] - ZeRNase I – Zebra fish

**[[2pqx]], [[2pqy]] - EcRNase I
 - ''Escherichia coli''

**[[2z70]], [[2ea1]] - EcRNase I + DNA


**[[3tsr]] – mRNase I + inhibitor

*

 RNase II

**[[2ix0]], [[2id0]] - EcRNase II


**[[2ix1]] - EcRNase II (mutant)


**[[1m58]], [[1km8]], [[1km9]]- BuRNase 2 - Bullfrog


**[[1bc4]] - BuRNase 2 - NMR


**[[1m07]] - BuRNase 2 + DNA



**[[2bex]] - hRNase 2 + RNase inhibitor protein

**[[2bzz]], [[2c01]], [[2c02]], [[2c05]] - hRNase 2 + inhibitor

*RNase III

**[[2nue]], [[2nuf]], [[2nug]], [[1yyk]], [[1yyw]], [[4m2z]], [[4m30]] - AaRNase III + RNA - ''Aquifex aeolicus''

**[[2ez6]], [[1yyo]], [[1yz9]], [[1rc7]] - AaRNase III (mutant) + RNA 


**[[1rc5]], [[1i4s]], [[1jfz]] - AaRNase III N-terminal


**[[1z5f]] - BuRNase III

**[[2a11]] - MtRNase III - ''Mycobacterium tuberculosis''

**[[1o0w]] - TmRNase III - ''Thermotoga maritima''


**[[1t4n]], [[1t4o]] - yRNase III – yeast - NMR

**[[2lbs]] - yRNase III RNA-binding domain + RNA – NMR

**[[2lup]], [[4oog]] - yRNase III RNA-binding domain + RNA

**[[2luq]] - yRNase III RNA-binding domain

**[[2kb5]] - hRNase 3 - NMR


**[[1dyt]], [[1qmt]] - hRNase 3


**[[1h1h]] - hRNase 3 + nucleotide



**[[2khx]] – hRNase III

**[[3n3w]], [[3o2r]] - RNase III nuclease domain – ''Campylobacter jejuni''

*RNase 4

**[[1wdy]] - hRNase 4


**[[2rnf]], [[1rnf]] - hRNase 4 + nucleotide


**[[1kvz]] - BuRNase 4 - NMR



*RNase 5

**[[1un3]], [[1un4]], [[1un5]], [[1gv7]], [[1b1e]], [[1b1j]], [[1k59]], [[1k5a]], [[1k5b]] - hRNase 5 (mutant)


**[[1ang]], [[1b1i]], [[2ang]] - hRNase 5

**[[1awz]] - hRNase 5 - NMR

**[[1a4y]] - hRNase 5 + RNAse inhibitor

**[[1agi]] - bRNase 5

**[[1h53]], [[1hby]] - hRNase 5 + phosphate derivative

**[[1gio]] - bRNase 5 - NMR

**[[1h53]] - hRNase 5 + PO4

**[[1h0d]] - hRNase 5 + antibody

**[[3lje]] - ZeRNase 5

**[[2bwk]] - mRNase 5 + sulfate - mouse

**[[2bwl]] - mRNase 5 + phosphate

**[[2j4t]] - mRNase 5

*RNase 6

**[[1oj1]], [[1oj8]] – BuRNase + nucleotide

*RNase 7

**[[2hky]] - hRNase 7 - NMR



*RNase A

**[[1rra]] - RNase A (mutant) – rat

**[[4j5z]], [[4j60]], [[4j61]], [[4j62]], [[4j63]], [[4j64]], [[4j65]], [[4j66]], [[4j67]], [[4j68]], [[4j69]], [[4j6a]], [[4mxf]], [[1rta]] - bRNase A

**[[4k7m]] - bRNase A (mutant)

**[[2aas]] - bRNase A – NMR

**[[4kxh]] – hRNase A

**[[2e33]] – bRNase A + F-box only protein 2

**[[4l55]] – bRNase A + aziru

*RNase B

**[[1rbb]] – bRNase B

**[[1rbj]] - bRNase B + tetranucleotide

*RNase BA

**[[1x1u]], [[1x1x]], [[1x1y]], [[1b27]], [[1b2u]], [[1b3s]], [[1x1w]] - BaRNase BA + Barstar (mutant) - ''Bacillus amyloliquefaciens
''

**[[3da7]], [[1brs]], [[1bgs]] - BaRNase BA + Barstar


**[[1b2s]], [[2za4]] - BaRNase BA (mutant) + Barstar (mutant)

**[[1brn]], [[2kf5]], [[2kf6]], [[1rnb]] - BaRNase BA + nucleotide

**[[3kch]], [[2f4y]], [[2f56]], [[2f5m]], [[2f5w]] - BaRNase BA crosslinked


**[[2kf3]], [[2kf4]], [[1fw7]], [[1bnr]] - BaRNase BA – NMR

**[[1yvs]], [[1b2x]], [[1a2p]], [[1bni]], [[1bnj]] - BaRNase BA 


**[[1b20]], [[1b21]], [[1b2z]], [[1bne]], [[1bnf]], [[1bng]], [[1brh]], [[1bri]], [[1brj]], [[1brk]], [[1bns]], [[1brg]], [[1bsa]], [[1bsb]], [[1bsc]], [[1bsd]], [[1bse]], [[1ban]], [[1bao]] - BaRNase BA (mutant)



*RNase D

**[[1yt3]] - EcRNase D



*RNase E

**[[2vmk]], [[2c4r]], [[2bx2]] - EcRNase E catalytic domain

**[[1slj]] - EcRNase E S1 domain - NMR


**[[1smx]], [[1sn8]] - EcRNase E S1 domain 


**[[2vrt]], [[2c0b]] - EcRNase E catalytic domain + RNA

**[[3h8a]] – EcRNase E recognition domain + enolase

*RNase F1

**[[1fus]], [[1fut]] – GfRNase F1 + nucleotide – ''Gibberella fujikuroi''

**[[1rck]], [[1rcl]] - GfRNase F1 - NMR

*RNase H

**[[3h7i]], [[3h8s]], [[3h8w]] - T4RNase H (mutant) - Enterobacteria phage T4


**[[2ihn]] - T4RNase H (mutant) + DNA


**[[3h8j]], [[1tfr]]- T4RNase H


**[[4e89]] – Rnase H – XMRV

**[[2rpi]], [[1ril]] - TtRNase H - ''Thermus thermophilus'' - NMR


**[[1rbr]], [[1rbs]], [[1rbt]], [[1rbu]], [[1rbv]], [[2rn2]] - EcRNase H

**[[1lav]], [[1law]], [[1rda]], [[1rdb]], [[1rdc]] - EcRNase H (mutant)

**[[1jl2]] - EcRNase H /TtRNase H


**[[3d0p]], [[3ey1]], [[3i8d]] - BhRNase H (mutant) + DNA - ''Bacillus halodurans''


**[[1zbf]] - BhRNase H (mutant)


**[[2r7y]], [[2g8f]], [[2g8h]], [[2g8i]], [[2g8k]], [[2g8u]], [[2g8v]], [[2g8w]], [[1zbi]], [[1zbl]], [[3twh]], [[3uld]] - BhRNase H (mutant) + RNA + DNA



**[[4htu]], [[4hue]], [[4huf]], [[4hug]] - BhRNase H (mutant) + DNA

**[[4ibn]] – uRNase H – uncultured

**[[4h8k]] – uRNase H + RNA + DNA

*RNase HI

**[[2qk9]], [[2qkb]], [[2qkk]] - hRNase HI (mutant) + RNA + DNA


**[[3h08]] - RNase HI - ''Chlorobaculum tepidum''

**[[3aa2]], [[3aa3]], [[3aa4]], [[3aa5]], [[2yv0]], [[2z1g]], [[2z1h]], [[2z1i]], [[2z1j]], [[1wse]], [[1wsf]], [[1wsg]], [[1wsh]], [[1wsi]], [[1wsj]], [[1jxb]], [[1jl1]], [[1f21]], [[1kva]], [[1kvb]], [[1kvc]], [[1goa]], [[1gob]], [[1goc]] - EcRNase HI (mutant)


**[[1g15]], [[1rdd]], [[1rnh]] - EcRNase HI


**[[1rch]] - EcRNase HI - NMR


**[[2zqb]] - SoRNase HI (mutant) - ''Shewanella oneidensis''

**[[2e4l]] - SoRNase HI


**[[3bsu]] - hRNase HI catalytic domain + RNA + DNA


**[[2ehg]] - RNase HI - ''Sulfolobus tokodaii''


**[[1qhk]] - yRNase HI N-terminal – NMR

**[[3u3g]] – RNase HI – uncultured organism

**[[4e19]], [[4nyn]] – RNase HI – ''Halobacterium salinarium''

*RNase HII

**[[3p83]] - AfRNase HII + DNA polymerase sliding clamp - ''Archaeoglobus fulgidus''


**[[1i39]], [[1i3a]] - AfRNAse HII


**[[3puf]], [[3p56]], [[3p5j]] - hRNAse H2 subunits α+β+γ 


**[[3kio]] - mRNase H2 subunits α+β+γ 
- mouse


**[[3o3g]] - TmRNase HII + DNA 


**[[3o3f]], [[3o3h]], [[4hht]] - TmRNase HII (mutant) + DNA

**[[2etj]] - TmRNase HII 


**[[1x1p]], [[1io2]] - TkRNase HII


**[[2dfe]], [[2dff]], [[2dfh]] - TkRNase HII (mutant) - ''Thermococcus kodakarensis
''

**[[1eke]] - RNase HII - ''Methanocalcococcus jannaschii

''

*RNase HIII

**[[2d0a]], [[2d0b]], [[2d0c]] - GsRNase HIII - ''Geobacillus stearothermophilus''



**[[3asm]] - GsRNase HIII (mutant)

**[[1uax]] - PhRNase HIII – ''Pyrococcus horikoshii''

**[[3vn5]] - AaRNase HIII

*RNase J

**[[3bk1]] - TtRNase J


**[[3bk2]] - TtRNase J + nucleotide

**[[3zq4]] - BsRNase J1- ''Bacillus subtilis''

*RNase L

**[[4o1o]] - pRNase L + oligoadenylate + CMP – pig

**[[4o1p]] - pRNase L + oligoadenylate + AMPPNP

**[[4oav]] - hRNase L + oligoadenylate + AMPPCP + RNA

*RNase LE

**[[1dix]] - RNase LE - tomato

*RNase MAR1

**[[1xn4]] - RNase MAR1 – ''Leishmania major''

**[[2b34]] - RNase MAR1 – ''Caenorhabditis elegans''

*RNase MS

**[[1rms]], [[1rds]] - RNase MS + nucleotide - ''Aspergillus phoenicis''

*RNase MC1

**[[1v9h]], [[1j1f]], [[1j1g]] - McRNase MC1 (mutant) + nucleotide - ''Momordica charantia'' 


**[[1ucg]] - McRNase MC1 (mutant)

**[[1ucd]], [[1uca]], [[1ucc]] - McRNase MC1 + nucleotide

**[[1bk7]] - McRNase MC1



*RNase NT

**[[1vcz]], [[1vd1]], [[1vd3]] - toRNase NT + nucleotide - tobacco 



**[[1iyb]] - toRNase NW

*RNase P

**[[3ok7]], [[3okb]], [[3q1q]], [[3q1r]] - TmRNase P + TmRNase P RNA + tRNA Phe


**[[1nz0]] - TmRNase P


**[[1d6t]] - RNase P - ''Staphylococcus aureus''

**[[2a64]] - BsRNase P (mutant) - ''Bacillus stearothermophilus

''

**[[1a6f]], [[1nbs]], [[2jg4]] - BsRNase P (mutant)

**[[1ts9]], [[1tsf]] – AfRNase P

**[[1u9s]] – RNase P – synthetic

**[[2avs]] - PfRNase P (mutant) – ''Pyrococcus furiosus''

**[[2k3r]], [[2ki7]] - PfRNase P

**[[2ljp]] – EcRNase P

**[[2av5]] - PhRNase P component 2

**[[1x0t]] - PhRNase P component 4

**[[2zae]] - PhRNase P component 1 and 4

**[[2czv]] - PhRNase P component 2 (mutant) and 3

**[[2cvz]], [[2zae]] – PhRNase P

**[[3iab]] – yRNase P subunits POP6 POP7 + RNase MRP P3 domain

*RNase PH

**[[3dd6]] - RNase PH - ''Bacillus anthracis
''

**[[1oyp]], [[1oyr]], [[1oys]] - BsRNase PH 


**[[1r6l]], [[1r6m]] - PaRNase PH - ''Pseudomonas aeruginosa
''

**[[3b4t]] - MtRNase PH - ''Mycobacterium tuberculosis'' 


**[[1udn]] - AaRNase PH


**[[1udo]], [[1udq]], [[1uds]] - AaRNase PH (mutant)



*RNase RH

**[[1bol]] – ''Rhizopus niveus''

*RNase S

**[[3oqy]], [[3oqz]], [[3or0]], [[1z3l]], [[1z3m]], [[1z3p]], [[1y92]], [[1y94]], [[1fev]], [[1d5d]], [[1d5e]], [[1d5h]], [[2rln]], [[1qwq]], [[4n4c]] - bRNase S seminal (mutant)


**[[1tq9]], [[1r5c]], [[11ba]], [[11bg]] - bRNase S + nucleotide


**[[1r5d]], [[1r3m]], [[1n1x]], [[1n3z]], [[1j7z]], [[1j80]], [[1j81]], [[1j82]], [[1cjq]], [[1cjr]], [[1bsr]],[[1rbc]], [[1rbd]], [[1rbe]], [[1rbf]], [[1rbg]], [[1rbh]], [[1rbi]], [[1rnu]], [[1rnv]], [[2rns]] - bRNase S


**[[1b6v]] - bRNase S/bRNase A

*RNase S3

**[[1iqq]] - RNase S3 - Japanese pear

*RNase SA

**[[3a5e]], [[1zgx]], [[1ynv]], [[1t2h]], [[1t2i]], [[1uci]], [[1ucj]], [[1uck]], [[1ucl]], [[1i70]], [[1i8v]], [[1box]], [[4gho]] - SaRNase SA guanyl-specific (mutant) - ''Streptomyces aureofaciens
''

**[[1lni]],[[1c54]], [[1rge]], [[1rgf]], [[1rgg]], [[1rgh]], [[1sar]] - SaRNase SA

**[[1gmp]], [[1gmq]], [[1gmr]], [[2sar]] - SaRNase SA +nucleotide


**[[1ay7]] - SaRNase SA + Barstar

**[[1rsn]] - SaRNase SA + cyclophosphothiolate

*RNase SA2

**[[1py3]], [[1pyl]] - SaRNase SA2

**[[3dgy]], [[3dh2]], [[3d4a]], [[3d5g]], [[3d5i]] - SaRNase SA2 + mononucleotide

*RNase SA3

**[[1mgr]], [[1mgw]] - SaRNase SA3

*RNase SF11

**[[1ioo]] - RNase SF11 - ''Nicotiana alata''



*RNase T

**[[2is3]] - EcRNase T


**[[2f96]] - PaRNase T

**[[3ngy]] – EcRNase T (mutant) + His tag

**[[3ngz]] - EcRNase T (mutant) + nucleotide

**[[3nh0]], [[3nh1]], [[3nh2]] - EcRNase T + nucleotide

**[[3v9s]], [[3v9u]], [[3v9w]], [[3v9x]], [[3v9z]], [[3va0]], [[3va3]], [[4kaz]], [[4kb0]], [[4kb1]] - EcRNase T + DNA

*RNase T1

**[[1tto]],[[1rn1]], [[1rn4]], [[1rnt]], [[2aad]], [[2aae]] - AoRNase T1 - ''Aspergillus oryzae'' 


**[[1q9e]], [[1iyy]], [[1i2e]], [[1i2f]], [[1i2g]], [[1i3f]], [[1i3i]], [[1hz1]], [[1fys]], [[1fzu]], [[1ch0]], [[4bir]], [[3bir]], [[5bir]],[[1g02]], [[1hyf]], [[1trp]], [[1trq]], [[2bir]], [[4rnt]], [[5rnt]], [[6rnt]], [[7rnt ]], [[8rnt]], [[9rnt]] - AoRNase T1 (mutant)

**[[1lov]], [[1low]], [[1loy]], [[1i0v]], [[1i0x]], [[1b2m]], [[1rhl]], [[1bir]], [[1rgk]], [[1rgl]] - AoRNase T1 (mutant) + nucleotide

**[[1bvi]], [[2bu4]], [[2hoh]], [[4hoh]], [[5hoh]], [[3hoh]], [[2gsp]], [[3gsp]], [[4gsp]], [[5gsp]], [[6gsp]], [[7gsp]], [[1gsp]], [[1det]], [[1rls]], [[1lra]], [[1rga]],[[1bu4]], [[1rgc]], [[2rnt]], [[3bu4]], [[4bu4]], [[5bu4]], [[3syu]], [[3urp]] - AoRNase T1 + nucleotide


**[[3rnt]] - AoRNase T1 + V

**[[1ygw]] - AoRNase T1 – NMR

*RNase T2

**[[3t0o]] – hRNase T2

*RNase U2

**[[3agn]], [[3ago]], [[3ahw]] - UsRNase U2 + AMP - ''Ustilago sphaerogena
''

**[[1rtu]] - UsRNase U2

*RNase U2B

**[[3ahs]] - UsRNase U2B

*RNase Z

**[[2e7y]] - TmRNase Z

**[[2fk6]], [[4gcw]] - BsRNase Z (mutant) + tRNA Thr


**[[1y44]] - BsRNase Z (mutant)

**[[2cbn]] – EcRNase Z

**[[3v32]], [[3v33]], [[3v34]] – hRNase Z

*α-sarcin

**[[1de3]] - αsRNase – ''Aspergillus giganteus''

**[[1r4y]] - αsRNase (mutant)

*Oligoribonuclease

**[[2igi]], [[1yta]] – EcORNase

**[[2gbz]] - ORNase - ''Xanthomonas campestris''

**[[1j9a]] - ORNase - ''Haemophilus influenzae''

**[[3tr8]] – ORNase – ''Coxiella burnetii''

*Polynucleotide Phosphorylase

**[[3cdi]] - EcPNPase

**[[3gll]] - EcPNPase core

**[[3cdj]] - EcPNPase C-terminal truncated

**[[1e3h]], [[1e3p]] - PNPase - ''Streptomyces antibioticus''

**[[3gcm]], [[3gme]], [[3h1c]] - EcPNPase + RNase E recognition domain

**[[3h36]] - PNPase fragment - ''Streptococcus mutans''

*Binase

**[[1gou]], [[1gov]], [[1goy]] – BiBinase – ''Bacillus intermedius''

**[[2rbi]], [[4haa]] – BiBinase (mutant)

**[[1buj]] – BiBinase – NMR

*Poly(A)-specific RNase

**[[1ug8]] – mParn R3H domain - NMR

**[[1whv]] – mParn RNA-binding domain - NMR

**[[2rok]] - mParn CAP-binding domain - NMR

**[[3d45]] - mParn + nucleotide

**[[2a1s]] - hParn

**[[2a1r]], [[3ctr]] – hParn + nucleotide

**[[2zpo]] – RNase – ''Chelonia mydas''

**[[3a4y]], [[3idz]], [[3ie0]], [[3ie2]] – TtRNase (mutant) – ''Thermus thermophilus''

**[[3iek]] - TtRNase

**[[3ie1]], [[3iem]] - TtRNase (mutant) + RNA

**[[3iel]] - TtRNase + nucleotide

**[[4b8a]] – yRNase pop2 + cell division cycle protein 39

**[[4b8c]] – yRNase pop2 + cell division cycle protein 39 + CCR4

}}

==References==

<references/>

[[Category:Topic Page]]

*Created with the participation of [[User:David S. Goodsell|David S. Goodsell]], [[User:Eric Martz|Eric Martz]], and [[User:Eran Hodis|Eran Hodis]].