1mzj
From Proteopedia
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|PDB= 1mzj |SIZE=350|CAPTION= <scene name='initialview01'>1mzj</scene>, resolution 2.1Å | |PDB= 1mzj |SIZE=350|CAPTION= <scene name='initialview01'>1mzj</scene>, resolution 2.1Å | ||
|SITE= | |SITE= | ||
| - | |LIGAND= <scene name='pdbligand= | + | |LIGAND= <scene name='pdbligand=ACE:ACETYL+GROUP'>ACE</scene>, <scene name='pdbligand=COA:COENZYME+A'>COA</scene> |
| - | |ACTIVITY= [http://en.wikipedia.org/wiki/Beta-ketoacyl-acyl-carrier-protein_synthase_I Beta-ketoacyl-acyl-carrier-protein synthase I], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=2.3.1.41 2.3.1.41] | + | |ACTIVITY= <span class='plainlinks'>[http://en.wikipedia.org/wiki/Beta-ketoacyl-acyl-carrier-protein_synthase_I Beta-ketoacyl-acyl-carrier-protein synthase I], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=2.3.1.41 2.3.1.41] </span> |
| - | |GENE= zhuH ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id= | + | |GENE= zhuH ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=140437 Streptomyces sp. R1128]) |
| + | |DOMAIN= | ||
| + | |RELATEDENTRY=[[1ebl|1EBL]] | ||
| + | |RESOURCES=<span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1mzj FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1mzj OCA], [http://www.ebi.ac.uk/pdbsum/1mzj PDBsum], [http://www.rcsb.org/pdb/explore.do?structureId=1mzj RCSB]</span> | ||
}} | }} | ||
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==About this Structure== | ==About this Structure== | ||
| - | 1MZJ is a [[Single protein]] structure of sequence from [http://en.wikipedia.org/wiki/Streptomyces_sp. | + | 1MZJ is a [[Single protein]] structure of sequence from [http://en.wikipedia.org/wiki/Streptomyces_sp._r1128 Streptomyces sp. r1128]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1MZJ OCA]. |
==Reference== | ==Reference== | ||
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[[Category: Beta-ketoacyl-acyl-carrier-protein synthase I]] | [[Category: Beta-ketoacyl-acyl-carrier-protein synthase I]] | ||
[[Category: Single protein]] | [[Category: Single protein]] | ||
| - | [[Category: Streptomyces sp. | + | [[Category: Streptomyces sp. r1128]] |
[[Category: Connell, J O.]] | [[Category: Connell, J O.]] | ||
[[Category: Keatinge-Clay, A.]] | [[Category: Keatinge-Clay, A.]] | ||
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[[Category: Stroud, R M.]] | [[Category: Stroud, R M.]] | ||
[[Category: Tsai, S C.]] | [[Category: Tsai, S C.]] | ||
| - | [[Category: ACE]] | ||
| - | [[Category: COA]] | ||
[[Category: aromatic polyketide]] | [[Category: aromatic polyketide]] | ||
[[Category: beta-ketosynthase]] | [[Category: beta-ketosynthase]] | ||
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[[Category: catalytic triad]] | [[Category: catalytic triad]] | ||
| - | ''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on | + | ''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Sun Mar 30 22:23:16 2008'' |
Revision as of 19:23, 30 March 2008
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| , resolution 2.1Å | |||||||
|---|---|---|---|---|---|---|---|
| Ligands: | , | ||||||
| Gene: | zhuH (Streptomyces sp. R1128) | ||||||
| Activity: | Beta-ketoacyl-acyl-carrier-protein synthase I, with EC number 2.3.1.41 | ||||||
| Related: | 1EBL
| ||||||
| Resources: | FirstGlance, OCA, PDBsum, RCSB | ||||||
| Coordinates: | save as pdb, mmCIF, xml | ||||||
Crystal Structure of the Priming beta-Ketosynthase from the R1128 Polyketide Biosynthetic Pathway
Overview
ZhuH is a priming ketosynthase that initiates the elongation of the polyketide chain in the biosynthetic pathway of a type II polyketide, R1128. The crystal structure of ZhuH in complex with the priming substrate acetyl-CoA reveals an extensive loop region at the dimer interface that appears to affect the selectivity for the primer unit. Acetyl-CoA is bound in a 20 A-long channel, which placed the acetyl group against the catalytic triad. Analysis of the primer unit binding site in ZhuH suggests that it can accommodate acyl chains that are two to four carbons long. Selectivity and primer unit size appear to involve the side chains of three residues on the loops close to the dimer interface that constitute the bottom of the substrate binding pocket.
About this Structure
1MZJ is a Single protein structure of sequence from Streptomyces sp. r1128. Full crystallographic information is available from OCA.
Reference
Crystal structure of the priming beta-ketosynthase from the R1128 polyketide biosynthetic pathway., Pan H, Tsai S, Meadows ES, Miercke LJ, Keatinge-Clay AT, O'Connell J, Khosla C, Stroud RM, Structure. 2002 Nov;10(11):1559-68. PMID:12429097
Page seeded by OCA on Sun Mar 30 22:23:16 2008
Categories: Beta-ketoacyl-acyl-carrier-protein synthase I | Single protein | Streptomyces sp. r1128 | Connell, J O. | Keatinge-Clay, A. | Khosla, C. | Meadows, E S. | Miercke, L J.W. | Pan, H. | Stroud, R M. | Tsai, S C. | Aromatic polyketide | Beta-ketosynthase | Biosynthetic engineering | Catalytic triad
