1o0a
From Proteopedia
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|PDB= 1o0a |SIZE=350|CAPTION= <scene name='initialview01'>1o0a</scene>, resolution 1.62Å | |PDB= 1o0a |SIZE=350|CAPTION= <scene name='initialview01'>1o0a</scene>, resolution 1.62Å | ||
|SITE= | |SITE= | ||
| - | |LIGAND= | + | |LIGAND= <scene name='pdbligand=LI1:1-[2,6,10.14-TETRAMETHYL-HEXADECAN-16-YL]-2-[2,10,14-TRIMETHYLHEXADECAN-16-YL]GLYCEROL'>LI1</scene>, <scene name='pdbligand=RET:RETINAL'>RET</scene>, <scene name='pdbligand=SQU:2,10,23-TRIMETHYL-TETRACOSANE'>SQU</scene> |
|ACTIVITY= | |ACTIVITY= | ||
|GENE= BOP ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=2242 Halobacterium salinarum]) | |GENE= BOP ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=2242 Halobacterium salinarum]) | ||
| + | |DOMAIN= | ||
| + | |RELATEDENTRY=[[1c3w|1C3W]], [[1m0l|1M0L]], [[1m0k|1M0K]], [[1m0m|1M0M]] | ||
| + | |RESOURCES=<span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1o0a FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1o0a OCA], [http://www.ebi.ac.uk/pdbsum/1o0a PDBsum], [http://www.rcsb.org/pdb/explore.do?structureId=1o0a RCSB]</span> | ||
}} | }} | ||
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[[Category: Single protein]] | [[Category: Single protein]] | ||
[[Category: Lanyi, J K.]] | [[Category: Lanyi, J K.]] | ||
| - | [[Category: LI1]] | ||
| - | [[Category: RET]] | ||
| - | [[Category: SQU]] | ||
[[Category: 7-transmembrane]] | [[Category: 7-transmembrane]] | ||
[[Category: haloarchaea]] | [[Category: haloarchaea]] | ||
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[[Category: serpentine]] | [[Category: serpentine]] | ||
| - | ''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on | + | ''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Sun Mar 30 22:38:04 2008'' |
Revision as of 19:38, 30 March 2008
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| , resolution 1.62Å | |||||||
|---|---|---|---|---|---|---|---|
| Ligands: | , , | ||||||
| Gene: | BOP (Halobacterium salinarum) | ||||||
| Related: | 1C3W, 1M0L, 1M0K, 1M0M
| ||||||
| Resources: | FirstGlance, OCA, PDBsum, RCSB | ||||||
| Coordinates: | save as pdb, mmCIF, xml | ||||||
BACTERIORHODOPSIN L INTERMEDIATE AT 1.62 A RESOLUTION
Overview
We produced the L intermediate of the photocycle in a bacteriorhodopsin crystal in photo-stationary state at 170 K with red laser illumination at 60% occupancy, and determined its structure to 1.62 A resolution. With this model, high-resolution structural information is available for the initial bacteriorhodopsin, as well as the first five states in the transport cycle. These states involve photo-isomerization of the retinal and its initial configurational changes, deprotonation of the retinal Schiff base and the coupled release of a proton to the extracellular membrane surface, and the switch event that allows reprotonation of the Schiff base from the cytoplasmic side. The six structural models describe the transformations of the retinal and its interaction with water 402, Asp85, and Asp212 in atomic detail, as well as the displacements of functional residues farther from the Schiff base. The changes provide rationales for how relaxation of the distorted retinal causes movements of water and protein atoms that result in vectorial proton transfers to and from the Schiff base.
About this Structure
1O0A is a Single protein structure of sequence from Halobacterium salinarum. Full crystallographic information is available from OCA.
Reference
Mechanism of proton transport in bacteriorhodopsin from crystallographic structures of the K, L, M1, M2, and M2' intermediates of the photocycle., Lanyi JK, Schobert B, J Mol Biol. 2003 Apr 25;328(2):439-50. PMID:12691752
Page seeded by OCA on Sun Mar 30 22:38:04 2008
