1opo
From Proteopedia
| Line 4: | Line 4: | ||
|PDB= 1opo |SIZE=350|CAPTION= <scene name='initialview01'>1opo</scene>, resolution 3.20Å | |PDB= 1opo |SIZE=350|CAPTION= <scene name='initialview01'>1opo</scene>, resolution 3.20Å | ||
|SITE= | |SITE= | ||
| - | |LIGAND= <scene name='pdbligand= | + | |LIGAND= <scene name='pdbligand=CA:CALCIUM+ION'>CA</scene>, <scene name='pdbligand=SO4:SULFATE+ION'>SO4</scene> |
|ACTIVITY= | |ACTIVITY= | ||
|GENE= | |GENE= | ||
| + | |DOMAIN= | ||
| + | |RELATEDENTRY=[[2tbv|2TBV]] | ||
| + | |RESOURCES=<span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1opo FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1opo OCA], [http://www.ebi.ac.uk/pdbsum/1opo PDBsum], [http://www.rcsb.org/pdb/explore.do?structureId=1opo RCSB]</span> | ||
}} | }} | ||
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[[Category: Wilson, K S.]] | [[Category: Wilson, K S.]] | ||
[[Category: mashchuk, V Stel.]] | [[Category: mashchuk, V Stel.]] | ||
| - | [[Category: CA]] | ||
| - | [[Category: SO4]] | ||
[[Category: carmovirus]] | [[Category: carmovirus]] | ||
[[Category: icosahedral virus]] | [[Category: icosahedral virus]] | ||
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[[Category: x-ray diffraction]] | [[Category: x-ray diffraction]] | ||
| - | ''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on | + | ''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Sun Mar 30 22:48:36 2008'' |
Revision as of 19:48, 30 March 2008
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| , resolution 3.20Å | |||||||
|---|---|---|---|---|---|---|---|
| Ligands: | , | ||||||
| Related: | 2TBV
| ||||||
| Resources: | FirstGlance, OCA, PDBsum, RCSB | ||||||
| Coordinates: | save as pdb, mmCIF, xml | ||||||
THE STRUCTURE OF CARNATION MOTTLE VIRUS
Overview
The structure of the Carnation Mottle Virus (CMtV) capsid protein has been determined at 3.2 A resolution by the method of molecular replacement. Three-dimensional data were collected from a small number of crystals (sp.g. I23, a = 382.6 A) using the synchrotron radiation with an image plate as detector. The coordinates of Tomato Bushy Stunt Virus (TBSV) were used as a searching model. Refinement of the coordinates of 7,479 non-hydrogen atoms performed by the program XPLOR, has led to an R-factor of 18.3%. It was found that the amino acid chain fold of capsid protein is very similar to that in other icosahedral viruses. However, there are some differences in the contact regions between protein subunits and also the lack of the beta-annulus around the 3-fold icosahedral axes. The structural and biochemical results lead us to consider an alternative assembly pathway.
About this Structure
1OPO is a Single protein structure of sequence from Carnation mottle virus. Full crystallographic information is available from OCA.
Reference
The atomic structure of Carnation Mottle Virus capsid protein., Morgunova EYu, Dauter Z, Fry E, Stuart DI, Stel'mashchuk VYa, Mikhailov AM, Wilson KS, Vainshtein BK, FEBS Lett. 1994 Feb 7;338(3):267-71. PMID:8307192
Page seeded by OCA on Sun Mar 30 22:48:36 2008
