1peg
From Proteopedia
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|PDB= 1peg |SIZE=350|CAPTION= <scene name='initialview01'>1peg</scene>, resolution 2.59Å | |PDB= 1peg |SIZE=350|CAPTION= <scene name='initialview01'>1peg</scene>, resolution 2.59Å | ||
|SITE= | |SITE= | ||
| - | |LIGAND= <scene name='pdbligand= | + | |LIGAND= <scene name='pdbligand=SAH:S-ADENOSYL-L-HOMOCYSTEINE'>SAH</scene>, <scene name='pdbligand=ZN:ZINC+ION'>ZN</scene> |
| - | |ACTIVITY= [http://en.wikipedia.org/wiki/Histone-lysine_N-methyltransferase Histone-lysine N-methyltransferase], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=2.1.1.43 2.1.1.43] | + | |ACTIVITY= <span class='plainlinks'>[http://en.wikipedia.org/wiki/Histone-lysine_N-methyltransferase Histone-lysine N-methyltransferase], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=2.1.1.43 2.1.1.43] </span> |
|GENE= | |GENE= | ||
| + | |DOMAIN= | ||
| + | |RELATEDENTRY=[[1ml9|1ML9]] | ||
| + | |RESOURCES=<span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1peg FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1peg OCA], [http://www.ebi.ac.uk/pdbsum/1peg PDBsum], [http://www.rcsb.org/pdb/explore.do?structureId=1peg RCSB]</span> | ||
}} | }} | ||
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[[Category: Yang, Z.]] | [[Category: Yang, Z.]] | ||
[[Category: Zhang, X.]] | [[Category: Zhang, X.]] | ||
| - | [[Category: SAH]] | ||
| - | [[Category: ZN]] | ||
[[Category: a hybrid beta sheet formed by dim-5 and h3 tail]] | [[Category: a hybrid beta sheet formed by dim-5 and h3 tail]] | ||
[[Category: a suv39-type histone-h3 lys-9 methyltransferase]] | [[Category: a suv39-type histone-h3 lys-9 methyltransferase]] | ||
| Line 39: | Line 40: | ||
[[Category: ternary structure of dim-5]] | [[Category: ternary structure of dim-5]] | ||
| - | ''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on | + | ''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Sun Mar 30 22:58:33 2008'' |
Revision as of 19:58, 30 March 2008
| |||||||
| , resolution 2.59Å | |||||||
|---|---|---|---|---|---|---|---|
| Ligands: | , | ||||||
| Activity: | Histone-lysine N-methyltransferase, with EC number 2.1.1.43 | ||||||
| Related: | 1ML9
| ||||||
| Resources: | FirstGlance, OCA, PDBsum, RCSB | ||||||
| Coordinates: | save as pdb, mmCIF, xml | ||||||
Structural basis for the product specificity of histone lysine methyltransferases
Overview
DIM-5 is a SUV39-type histone H3 Lys9 methyltransferase that is essential for DNA methylation in N. crassa. We report the structure of a ternary complex including DIM-5, S-adenosyl-L-homocysteine, and a substrate H3 peptide. The histone tail inserts as a parallel strand between two DIM-5 strands, completing a hybrid sheet. Three post-SET cysteines coordinate a zinc atom together with Cys242 from the SET signature motif (NHXCXPN) near the active site. Consequently, a narrow channel is formed to accommodate the target Lys9 side chain. The sulfur atom of S-adenosyl-L-homocysteine, where the transferable methyl group is to be attached in S-adenosyl-L-methionine, lies at the opposite end of the channel, approximately 4 A away from the target Lys9 nitrogen. Structural comparison of the active sites of DIM-5, an H3 Lys9 trimethyltransferase, and SET7/9, an H3 Lys4 monomethyltransferase, allowed us to design substitutions in both enzymes that profoundly alter their product specificities without affecting their catalytic activities.
About this Structure
1PEG is a Protein complex structure of sequences from Neurospora crassa. Full crystallographic information is available from OCA.
Reference
Structural basis for the product specificity of histone lysine methyltransferases., Zhang X, Yang Z, Khan SI, Horton JR, Tamaru H, Selker EU, Cheng X, Mol Cell. 2003 Jul;12(1):177-85. PMID:12887903
Page seeded by OCA on Sun Mar 30 22:58:33 2008
Categories: Histone-lysine N-methyltransferase | Neurospora crassa | Protein complex | Cheng, X. | Horton, J R. | Khan, S I. | Selker, E U. | Tamaru, H. | Yang, Z. | Zhang, X. | A hybrid beta sheet formed by dim-5 and h3 tail | A suv39-type histone-h3 lys-9 methyltransferase | Post-set zinc-binding site | Pre-set triangular zn3cys9 zinc cluster | Set domain protein forms a knot-like substructure | Ternary structure of dim-5
