This old version of Proteopedia is provided for student assignments while the new version is undergoing repairs. Content and edits done in this old version of Proteopedia after March 1, 2026 will eventually be lost when it is retired in about June of 2026.
Apply for new accounts at the new Proteopedia. Your logins will work in both the old and new versions.
3lef
From Proteopedia
(Difference between revisions)
| Line 1: | Line 1: | ||
| + | |||
==Crystal structure of HIV epitope-scaffold 4E10_S0_1Z6NA_001== | ==Crystal structure of HIV epitope-scaffold 4E10_S0_1Z6NA_001== | ||
<StructureSection load='3lef' size='340' side='right' caption='[[3lef]], [[Resolution|resolution]] 2.30Å' scene=''> | <StructureSection load='3lef' size='340' side='right' caption='[[3lef]], [[Resolution|resolution]] 2.30Å' scene=''> | ||
== Structural highlights == | == Structural highlights == | ||
| - | <table><tr><td colspan='2'>[[3lef]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/ | + | <table><tr><td colspan='2'>[[3lef]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/Synthetic_construct_sequences Synthetic construct sequences]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3LEF OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=3LEF FirstGlance]. <br> |
</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=EDO:1,2-ETHANEDIOL'>EDO</scene></td></tr> | </td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=EDO:1,2-ETHANEDIOL'>EDO</scene></td></tr> | ||
<tr id='related'><td class="sblockLbl"><b>[[Related_structure|Related:]]</b></td><td class="sblockDat">[[3lf6|3lf6]], [[3lf9|3lf9]], [[3lg7|3lg7]], [[3lh2|3lh2]], [[3lhp|3lhp]]</td></tr> | <tr id='related'><td class="sblockLbl"><b>[[Related_structure|Related:]]</b></td><td class="sblockDat">[[3lf6|3lf6]], [[3lf9|3lf9]], [[3lg7|3lg7]], [[3lh2|3lh2]], [[3lhp|3lhp]]</td></tr> | ||
| - | <tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=3lef FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3lef OCA], [http://www.rcsb.org/pdb/explore.do?structureId=3lef RCSB], [http://www.ebi.ac.uk/pdbsum/3lef PDBsum]</span></td></tr> | + | <tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=3lef FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3lef OCA], [http://pdbe.org/3lef PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=3lef RCSB], [http://www.ebi.ac.uk/pdbsum/3lef PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=3lef ProSAT]</span></td></tr> |
</table> | </table> | ||
== Evolutionary Conservation == | == Evolutionary Conservation == | ||
| Line 15: | Line 16: | ||
<text>to colour the structure by Evolutionary Conservation</text> | <text>to colour the structure by Evolutionary Conservation</text> | ||
</jmolCheckbox> | </jmolCheckbox> | ||
| - | </jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/ | + | </jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=3lef ConSurf]. |
<div style="clear:both"></div> | <div style="clear:both"></div> | ||
<div style="background-color:#fffaf0;"> | <div style="background-color:#fffaf0;"> | ||
| Line 25: | Line 26: | ||
From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.<br> | From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.<br> | ||
</div> | </div> | ||
| + | <div class="pdbe-citations 3lef" style="background-color:#fffaf0;"></div> | ||
== References == | == References == | ||
<references/> | <references/> | ||
__TOC__ | __TOC__ | ||
</StructureSection> | </StructureSection> | ||
| - | [[Category: Synthetic construct]] | + | [[Category: Synthetic construct sequences]] |
[[Category: Holmes, M A]] | [[Category: Holmes, M A]] | ||
[[Category: Epitope-scaffold]] | [[Category: Epitope-scaffold]] | ||
[[Category: Immune system]] | [[Category: Immune system]] | ||
Revision as of 23:36, 4 August 2016
Crystal structure of HIV epitope-scaffold 4E10_S0_1Z6NA_001
| |||||||||||
