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3nuq
From Proteopedia
(Difference between revisions)
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==Structure of a putative nucleotide phosphatase from Saccharomyces cerevisiae== | ==Structure of a putative nucleotide phosphatase from Saccharomyces cerevisiae== | ||
<StructureSection load='3nuq' size='340' side='right' caption='[[3nuq]], [[Resolution|resolution]] 1.70Å' scene=''> | <StructureSection load='3nuq' size='340' side='right' caption='[[3nuq]], [[Resolution|resolution]] 1.70Å' scene=''> | ||
== Structural highlights == | == Structural highlights == | ||
| - | <table><tr><td colspan='2'>[[3nuq]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/ | + | <table><tr><td colspan='2'>[[3nuq]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/Baker's_yeast Baker's yeast]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3NUQ OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=3NUQ FirstGlance]. <br> |
</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=CL:CHLORIDE+ION'>CL</scene>, <scene name='pdbligand=EDO:1,2-ETHANEDIOL'>EDO</scene>, <scene name='pdbligand=NA:SODIUM+ION'>NA</scene>, <scene name='pdbligand=PEG:DI(HYDROXYETHYL)ETHER'>PEG</scene></td></tr> | </td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=CL:CHLORIDE+ION'>CL</scene>, <scene name='pdbligand=EDO:1,2-ETHANEDIOL'>EDO</scene>, <scene name='pdbligand=NA:SODIUM+ION'>NA</scene>, <scene name='pdbligand=PEG:DI(HYDROXYETHYL)ETHER'>PEG</scene></td></tr> | ||
| - | <tr id='gene'><td class="sblockLbl"><b>[[Gene|Gene:]]</b></td><td class="sblockDat">SDT1, SSM1, YGL224C ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id= | + | <tr id='gene'><td class="sblockLbl"><b>[[Gene|Gene:]]</b></td><td class="sblockDat">SDT1, SSM1, YGL224C ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=559292 Baker's yeast])</td></tr> |
<tr id='activity'><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[http://en.wikipedia.org/wiki/5'-nucleotidase 5'-nucleotidase], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=3.1.3.5 3.1.3.5] </span></td></tr> | <tr id='activity'><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[http://en.wikipedia.org/wiki/5'-nucleotidase 5'-nucleotidase], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=3.1.3.5 3.1.3.5] </span></td></tr> | ||
| - | <tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=3nuq FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3nuq OCA], [http://www.rcsb.org/pdb/explore.do?structureId=3nuq RCSB], [http://www.ebi.ac.uk/pdbsum/3nuq PDBsum]</span></td></tr> | + | <tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=3nuq FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3nuq OCA], [http://pdbe.org/3nuq PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=3nuq RCSB], [http://www.ebi.ac.uk/pdbsum/3nuq PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=3nuq ProSAT]</span></td></tr> |
</table> | </table> | ||
| + | == Function == | ||
| + | [[http://www.uniprot.org/uniprot/SDT1_YEAST SDT1_YEAST]] Could be an enzyme that inactivates 6-azauracil by modifying it. | ||
== Evolutionary Conservation == | == Evolutionary Conservation == | ||
[[Image:Consurf_key_small.gif|200px|right]] | [[Image:Consurf_key_small.gif|200px|right]] | ||
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<text>to colour the structure by Evolutionary Conservation</text> | <text>to colour the structure by Evolutionary Conservation</text> | ||
</jmolCheckbox> | </jmolCheckbox> | ||
| - | </jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/ | + | </jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=3nuq ConSurf]. |
<div style="clear:both"></div> | <div style="clear:both"></div> | ||
__TOC__ | __TOC__ | ||
</StructureSection> | </StructureSection> | ||
[[Category: 5'-nucleotidase]] | [[Category: 5'-nucleotidase]] | ||
| - | [[Category: | + | [[Category: Baker's yeast]] |
[[Category: Brown, G]] | [[Category: Brown, G]] | ||
[[Category: Dong, A]] | [[Category: Dong, A]] | ||
Revision as of 19:34, 4 August 2016
Structure of a putative nucleotide phosphatase from Saccharomyces cerevisiae
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Categories: 5'-nucleotidase | Baker's yeast | Brown, G | Dong, A | Edwards, A M | Evdokimova, E | Joachimiak, A | Kudritsdka, M | Structural genomic | Savchenko, A | Singer, A U | Yakunin, A F | Yang, C | Alpha-beta hydrolase | Hydrolase | Mcsg | Metal dependent | PSI, Protein structure initiative | Pyrimidine nucleotidase | Resistance to pyrimidine derivative | Suppresses the 6-au sensitivity of transcription elongation factor s-ii
