1tyj
From Proteopedia
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|PDB= 1tyj |SIZE=350|CAPTION= <scene name='initialview01'>1tyj</scene>, resolution 1.60Å | |PDB= 1tyj |SIZE=350|CAPTION= <scene name='initialview01'>1tyj</scene>, resolution 1.60Å | ||
|SITE= | |SITE= | ||
| - | |LIGAND= <scene name='pdbligand=EDO:1,2-ETHANEDIOL'>EDO</scene> | + | |LIGAND= <scene name='pdbligand=EDO:1,2-ETHANEDIOL'>EDO</scene>, <scene name='pdbligand=MOH:METHANOL'>MOH</scene> |
|ACTIVITY= | |ACTIVITY= | ||
|GENE= CipBc(ScaA) ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=35825 Bacteroides cellulosolvens]) | |GENE= CipBc(ScaA) ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=35825 Bacteroides cellulosolvens]) | ||
| + | |DOMAIN= | ||
| + | |RELATEDENTRY=[[1qzn|1QZN]], [[1anu|1ANU]] | ||
| + | |RESOURCES=<span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1tyj FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1tyj OCA], [http://www.ebi.ac.uk/pdbsum/1tyj PDBsum], [http://www.rcsb.org/pdb/explore.do?structureId=1tyj RCSB]</span> | ||
}} | }} | ||
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[[Category: Rosenheck, S.]] | [[Category: Rosenheck, S.]] | ||
[[Category: Shimon, L J.W.]] | [[Category: Shimon, L J.W.]] | ||
| - | [[Category: EDO]] | ||
| - | [[Category: MOH]] | ||
[[Category: alpha helix]] | [[Category: alpha helix]] | ||
[[Category: beta sandwich]] | [[Category: beta sandwich]] | ||
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[[Category: flap]] | [[Category: flap]] | ||
| - | ''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on | + | ''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Mon Mar 31 00:02:53 2008'' |
Revision as of 21:02, 30 March 2008
| |||||||
| , resolution 1.60Å | |||||||
|---|---|---|---|---|---|---|---|
| Ligands: | , | ||||||
| Gene: | CipBc(ScaA) (Bacteroides cellulosolvens) | ||||||
| Related: | 1QZN, 1ANU
| ||||||
| Resources: | FirstGlance, OCA, PDBsum, RCSB | ||||||
| Coordinates: | save as pdb, mmCIF, xml | ||||||
Crystal Structure Analysis of type II Cohesin A11 from Bacteroides cellulosolvens
Overview
The incorporation of enzymes into the multi-enzyme cellulosome complex and its anchoring to the bacterial cell surface are dictated by a set of binding interactions between two complementary protein modules: the cohesin and the dockerin. In this work, the X-ray crystal structure of a type-II cohesin from scaffoldin A of Bacteroides cellulosolvens has been determined to a resolution of 1.6 angstroms using molecular replacement. The type-II B. cellulosolvens cohesin (Bc-cohesin-II) is the first detailed description of a crystal structure for a type-II cohesin, and its features were compared with the known type-I cohesins from Clostridium thermocellum and Clostridium cellulolyticum (Ct-cohesin-I and Cc-cohesin-I, respectively). The overall jelly-roll topology of the type-II Bc-cohesin is very similar to that observed for the type-I cohesins with three additional secondary structures: an alpha-helix and two "beta-flaps" that disrupt the normal course of a beta-strand. In addition, beta-strand 5 is elevated by approximately 4 angstroms on the surface of the molecule, relative to the type-I Ct and Cc-cohesins. Like its type-I analogue, the hydrophobic/aromatic core of Bc-cohesin-II comprises an upper and lower core, but an additional aromatic patch and conserved tryptophan at the crown of the molecule serves to stabilize the alpha-helix of the type-II cohesin. Comparison of Bc-cohesin-II with the known type-I cohesin-dockerin heterodimer suggests that each of the additional secondary structural elements assumes a flanking position relative to the putative dockerin-binding surface. The raised ridge formed by beta-strand 5 confers additional distinctive topographic features to the proposed binding interface that collectively distinguish between the type-II and type-I cohesins.
About this Structure
1TYJ is a Single protein structure of sequence from Bacteroides cellulosolvens. Full crystallographic information is available from OCA.
Reference
Crystal structure of a type-II cohesin module from the Bacteroides cellulosolvens cellulosome reveals novel and distinctive secondary structural elements., Noach I, Frolow F, Jakoby H, Rosenheck S, Shimon LW, Lamed R, Bayer EA, J Mol Biol. 2005 Apr 22;348(1):1-12. PMID:15808849
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