1wvp

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|PDB= 1wvp |SIZE=350|CAPTION= <scene name='initialview01'>1wvp</scene>, resolution 1.53&Aring;
|PDB= 1wvp |SIZE=350|CAPTION= <scene name='initialview01'>1wvp</scene>, resolution 1.53&Aring;
|SITE=
|SITE=
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|LIGAND= <scene name='pdbligand=SO4:SULFATE+ION'>SO4</scene> and <scene name='pdbligand=HEM:PROTOPORPHYRIN IX CONTAINING FE'>HEM</scene>
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|LIGAND= <scene name='pdbligand=HEM:PROTOPORPHYRIN+IX+CONTAINING+FE'>HEM</scene>, <scene name='pdbligand=NZH:(2S)-2-AMINO-3-[1-(1H-TETRAAZOL-5-YL)-1H-IMIDAZOL-4-YL]PROPANAL'>NZH</scene>, <scene name='pdbligand=SO4:SULFATE+ION'>SO4</scene>
|ACTIVITY=
|ACTIVITY=
|GENE=
|GENE=
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|DOMAIN=
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|RELATEDENTRY=
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|RESOURCES=<span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1wvp FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1wvp OCA], [http://www.ebi.ac.uk/pdbsum/1wvp PDBsum], [http://www.rcsb.org/pdb/explore.do?structureId=1wvp RCSB]</span>
}}
}}
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[[Category: Shiro, Y.]]
[[Category: Shiro, Y.]]
[[Category: Sugimoto, H.]]
[[Category: Sugimoto, H.]]
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[[Category: HEM]]
 
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[[Category: SO4]]
 
[[Category: chemical modification]]
[[Category: chemical modification]]
[[Category: distal hise7]]
[[Category: distal hise7]]
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[[Category: tetrazole]]
[[Category: tetrazole]]
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''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Thu Mar 20 15:02:06 2008''
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''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Mon Mar 31 00:41:36 2008''

Revision as of 21:41, 30 March 2008


PDB ID 1wvp

Drag the structure with the mouse to rotate
, resolution 1.53Å
Ligands: , ,
Resources: FirstGlance, OCA, PDBsum, RCSB
Coordinates: save as pdb, mmCIF, xml



Structure of chemically modified myoglobin with distal N-tetrazolyl-histidine E7(64)


Overview

Tetrazole-myoglobin (Tet-Mb), a site selectively modified myoglobin with tetrazole anion (-CN4-) covalently attached to the imidazole N epsilon of the distal histidine 64(E7) (see Fig. 1; Kamiya, N., Shiro, Y., Iwata, T., Iizuka, T., and Iwasaki, H. (1991) J. Am. Chem. Soc. 113, 1826-1829), exhibited unique properties in the reduction from ferric to ferrous states and in the reaction of its deoxy form with O2. The redox potential of Tet-Mb is obtained to be -193 mV, which is much lower than that of unmodified (native) myoglobin (50 mV), possibly due to the electrostatic interaction between the heme iron and the tetrazole group. The ferrous deoxy form of Tet-Mb was rapidly oxidized to its ferric form in the reaction with O2 at room temperature through an intermediary formation of its oxy form and with the generation of O2-. The oxy form of Tet-Mb can be detected by the optical spectral measurement at -12 degrees C, the rapid scan measurement at room temperature, and the electron spin resonance measurement of its cobalt-substituted derivative (Tet-Mb(Co2+)) at 77 K. In the kinetic measurement of the O2 binding reaction to Tet-Mb, its association and dissociation rate constants in the bimolecular reaction were 6.1 x 10(7) M-1 s-1 and 2200 s-1, respectively, showing that the tetrazole modification of His-64 extremely accelerates its association and dissociation rates. Taken together with the extremely fast autoxidation rate (53 h-1) obtained, these kinetic results suggested that the channel of O2 from the solvent region to the protein interior is open enough to pass the external ligand. The structure is discussed in relation to those of some genetic mutants. Taking these properties, we demonstrated that Tet-Mb can catalyze O2 consumption to generate O2-, coupled with the NADH-supported enzymatic reduction system of cytochrome P-450cam under an aerobic condition.

About this Structure

1WVP is a Single protein structure of sequence from Physeter catodon. Full crystallographic information is available from OCA.

Reference

Specific modification of structure and property of myoglobin by the formation of tetrazolylhistidine 64(E7). Reaction of the modified myoglobin with molecular oxygen., Shiro Y, Iwata T, Makino R, Fujii M, Isogai Y, Iizuka T, J Biol Chem. 1993 Sep 25;268(27):19983-90. PMID:8397193

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