1yu2
From Proteopedia
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|PDB= 1yu2 |SIZE=350|CAPTION= <scene name='initialview01'>1yu2</scene>, resolution 1.86Å | |PDB= 1yu2 |SIZE=350|CAPTION= <scene name='initialview01'>1yu2</scene>, resolution 1.86Å | ||
|SITE= | |SITE= | ||
| - | |LIGAND= <scene name='pdbligand=MG:MAGNESIUM ION'>MG</scene> | + | |LIGAND= <scene name='pdbligand=MG:MAGNESIUM+ION'>MG</scene> |
|ACTIVITY= | |ACTIVITY= | ||
|GENE= | |GENE= | ||
| + | |DOMAIN= | ||
| + | |RELATEDENTRY=[[1yu0|1YU0]], [[1yu1|1YU1]], [[1yu3|1YU3]], [[1yu4|1YU4]] | ||
| + | |RESOURCES=<span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1yu2 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1yu2 OCA], [http://www.ebi.ac.uk/pdbsum/1yu2 PDBsum], [http://www.rcsb.org/pdb/explore.do?structureId=1yu2 RCSB]</span> | ||
}} | }} | ||
| Line 26: | Line 29: | ||
[[Category: McMahon, S A.]] | [[Category: McMahon, S A.]] | ||
[[Category: Miller, J L.]] | [[Category: Miller, J L.]] | ||
| - | [[Category: MG]] | ||
[[Category: beta prism]] | [[Category: beta prism]] | ||
[[Category: beta sandwich]] | [[Category: beta sandwich]] | ||
| Line 33: | Line 35: | ||
[[Category: variability]] | [[Category: variability]] | ||
| - | ''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on | + | ''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Mon Mar 31 01:22:19 2008'' |
Revision as of 22:22, 30 March 2008
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| , resolution 1.86Å | |||||||
|---|---|---|---|---|---|---|---|
| Ligands: | |||||||
| Related: | 1YU0, 1YU1, 1YU3, 1YU4
| ||||||
| Resources: | FirstGlance, OCA, PDBsum, RCSB | ||||||
| Coordinates: | save as pdb, mmCIF, xml | ||||||
Major Tropism Determinant M1 Variant
Overview
Only few instances are known of protein folds that tolerate massive sequence variation for the sake of binding diversity. The most extensively characterized is the immunoglobulin fold. We now add to this the C-type lectin (CLec) fold, as found in the major tropism determinant (Mtd), a retroelement-encoded receptor-binding protein of Bordetella bacteriophage. Variation in Mtd, with its approximately 10(13) possible sequences, enables phage adaptation to Bordetella spp. Mtd is an intertwined, pyramid-shaped trimer, with variable residues organized by its CLec fold into discrete receptor-binding sites. The CLec fold provides a highly static scaffold for combinatorial display of variable residues, probably reflecting a different evolutionary solution for balancing diversity against stability from that in the immunoglobulin fold. Mtd variants are biased toward the receptor pertactin, and there is evidence that the CLec fold is used broadly for sequence variation by related retroelements.
About this Structure
1YU2 is a Single protein structure of sequence from Viruses. Full crystallographic information is available from OCA.
Reference
The C-type lectin fold as an evolutionary solution for massive sequence variation., McMahon SA, Miller JL, Lawton JA, Kerkow DE, Hodes A, Marti-Renom MA, Doulatov S, Narayanan E, Sali A, Miller JF, Ghosh P, Nat Struct Mol Biol. 2005 Oct;12(10):886-92. Epub 2005 Sep 18. PMID:16170324
Page seeded by OCA on Mon Mar 31 01:22:19 2008
