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3emz
From Proteopedia
(Difference between revisions)
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==Crystal structure of xylanase XynB from Paenibacillus barcinonensis complexed with a conduramine derivative== | ==Crystal structure of xylanase XynB from Paenibacillus barcinonensis complexed with a conduramine derivative== | ||
<StructureSection load='3emz' size='340' side='right' caption='[[3emz]], [[Resolution|resolution]] 2.08Å' scene=''> | <StructureSection load='3emz' size='340' side='right' caption='[[3emz]], [[Resolution|resolution]] 2.08Å' scene=''> | ||
== Structural highlights == | == Structural highlights == | ||
| - | <table><tr><td colspan='2'>[[3emz]] is a 1 chain structure | + | <table><tr><td colspan='2'>[[3emz]] is a 1 chain structure. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3EMZ OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=3EMZ FirstGlance]. <br> |
</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=HXH:(1S,2S,3R,6R)-6-[(4-PHENOXYBENZYL)AMINO]CYCLOHEX-4-ENE-1,2,3-TRIOL'>HXH</scene></td></tr> | </td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=HXH:(1S,2S,3R,6R)-6-[(4-PHENOXYBENZYL)AMINO]CYCLOHEX-4-ENE-1,2,3-TRIOL'>HXH</scene></td></tr> | ||
<tr id='related'><td class="sblockLbl"><b>[[Related_structure|Related:]]</b></td><td class="sblockDat">[[3emc|3emc]], [[3emq|3emq]]</td></tr> | <tr id='related'><td class="sblockLbl"><b>[[Related_structure|Related:]]</b></td><td class="sblockDat">[[3emc|3emc]], [[3emq|3emq]]</td></tr> | ||
| - | <tr id='gene'><td class="sblockLbl"><b>[[Gene|Gene:]]</b></td><td class="sblockDat">xynB ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=198119 Paenibacillus barcinonensis])</td></tr> | ||
<tr id='activity'><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[http://en.wikipedia.org/wiki/Endo-1,4-beta-xylanase Endo-1,4-beta-xylanase], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=3.2.1.8 3.2.1.8] </span></td></tr> | <tr id='activity'><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[http://en.wikipedia.org/wiki/Endo-1,4-beta-xylanase Endo-1,4-beta-xylanase], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=3.2.1.8 3.2.1.8] </span></td></tr> | ||
| - | <tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=3emz FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3emz OCA], [http://www.rcsb.org/pdb/explore.do?structureId=3emz RCSB], [http://www.ebi.ac.uk/pdbsum/3emz PDBsum]</span></td></tr> | + | <tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=3emz FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3emz OCA], [http://pdbe.org/3emz PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=3emz RCSB], [http://www.ebi.ac.uk/pdbsum/3emz PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=3emz ProSAT]</span></td></tr> |
</table> | </table> | ||
== Function == | == Function == | ||
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<text>to colour the structure by Evolutionary Conservation</text> | <text>to colour the structure by Evolutionary Conservation</text> | ||
</jmolCheckbox> | </jmolCheckbox> | ||
| - | </jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/ | + | </jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=3emz ConSurf]. |
<div style="clear:both"></div> | <div style="clear:both"></div> | ||
<div style="background-color:#fffaf0;"> | <div style="background-color:#fffaf0;"> | ||
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From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.<br> | From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.<br> | ||
</div> | </div> | ||
| + | <div class="pdbe-citations 3emz" style="background-color:#fffaf0;"></div> | ||
== References == | == References == | ||
<references/> | <references/> | ||
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</StructureSection> | </StructureSection> | ||
[[Category: Endo-1,4-beta-xylanase]] | [[Category: Endo-1,4-beta-xylanase]] | ||
| - | [[Category: Paenibacillus barcinonensis]] | ||
[[Category: Isorna, P]] | [[Category: Isorna, P]] | ||
[[Category: Sanz-Aparicio, J]] | [[Category: Sanz-Aparicio, J]] | ||
[[Category: Gh10 enzyme complex]] | [[Category: Gh10 enzyme complex]] | ||
[[Category: Hydrolase]] | [[Category: Hydrolase]] | ||
Revision as of 06:59, 5 August 2016
Crystal structure of xylanase XynB from Paenibacillus barcinonensis complexed with a conduramine derivative
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