2fz2
From Proteopedia
| Line 4: | Line 4: | ||
|PDB= 2fz2 |SIZE=350|CAPTION= <scene name='initialview01'>2fz2</scene>, resolution 2.90Å | |PDB= 2fz2 |SIZE=350|CAPTION= <scene name='initialview01'>2fz2</scene>, resolution 2.90Å | ||
|SITE= | |SITE= | ||
| - | |LIGAND= | + | |LIGAND= <scene name='pdbligand=C:CYTIDINE-5'-MONOPHOSPHATE'>C</scene> |
|ACTIVITY= | |ACTIVITY= | ||
|GENE= | |GENE= | ||
| + | |DOMAIN= | ||
| + | |RELATEDENTRY=[[1auy|1auy]], [[2fz1|2FZ1]], [[1w39|1w39]] | ||
| + | |RESOURCES=<span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2fz2 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2fz2 OCA], [http://www.ebi.ac.uk/pdbsum/2fz2 PDBsum], [http://www.rcsb.org/pdb/explore.do?structureId=2fz2 RCSB]</span> | ||
}} | }} | ||
| Line 33: | Line 36: | ||
[[Category: tymv]] | [[Category: tymv]] | ||
| - | ''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on | + | ''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Mon Mar 31 03:09:37 2008'' |
Revision as of 00:09, 31 March 2008
| |||||||
| , resolution 2.90Å | |||||||
|---|---|---|---|---|---|---|---|
| Ligands: | |||||||
| Related: | 1auy, 2FZ1, 1w39
| ||||||
| Resources: | FirstGlance, OCA, PDBsum, RCSB | ||||||
| Coordinates: | save as pdb, mmCIF, xml | ||||||
Structure of Turnip Yellow Mosaic Virus at 100 K
Overview
Difference electron density maps, based on structure factor amplitudes and experimental phases from crystals of wild-type turnip yellow mosaic virus and those of empty capsids prepared by freeze-thawing, show a large portion of the encapsidated RNA to have an icosahedral distribution. Four unique segments of base-paired, double-helical RNA, one to two turns in length, lie between 33-A and 101-A radius and are organized about either 2-fold or 5-fold icosahedral axes. In addition, single-stranded loops of RNA invade the pentameric and hexameric capsomeres where they contact the interior capsid surface. The remaining RNA, not seen in electron density maps, must serve as connecting links between these secondary structural elements and is likely icosahedrally disordered. The distribution of RNA observed crystallographically appears to be in agreement with models based on biochemical data and secondary structural analyses.
About this Structure
2FZ2 is a Single protein structure of sequence from Turnip yellow mosaic virus (isolate australia). Full crystallographic information is available from OCA.
Reference
The RNA of turnip yellow mosaic virus exhibits icosahedral order., Larson SB, Lucas RW, Greenwood A, McPherson A, Virology. 2005 Apr 10;334(2):245-54. PMID:15780874
Page seeded by OCA on Mon Mar 31 03:09:37 2008
