2h07
From Proteopedia
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|PDB= 2h07 |SIZE=350|CAPTION= <scene name='initialview01'>2h07</scene>, resolution 2.20Å | |PDB= 2h07 |SIZE=350|CAPTION= <scene name='initialview01'>2h07</scene>, resolution 2.20Å | ||
|SITE= | |SITE= | ||
| - | |LIGAND= <scene name='pdbligand=SO4:SULFATE ION'>SO4</scene> | + | |LIGAND= <scene name='pdbligand=SO4:SULFATE+ION'>SO4</scene> |
| - | |ACTIVITY= [http://en.wikipedia.org/wiki/Ribose-phosphate_diphosphokinase Ribose-phosphate diphosphokinase], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=2.7.6.1 2.7.6.1] | + | |ACTIVITY= <span class='plainlinks'>[http://en.wikipedia.org/wiki/Ribose-phosphate_diphosphokinase Ribose-phosphate diphosphokinase], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=2.7.6.1 2.7.6.1] </span> |
|GENE= PRPS1 ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=9606 Homo sapiens]) | |GENE= PRPS1 ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=9606 Homo sapiens]) | ||
| + | |DOMAIN= | ||
| + | |RELATEDENTRY=[[2h06|2H06]], [[2h08|2H08]] | ||
| + | |RESOURCES=<span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2h07 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2h07 OCA], [http://www.ebi.ac.uk/pdbsum/2h07 PDBsum], [http://www.rcsb.org/pdb/explore.do?structureId=2h07 RCSB]</span> | ||
}} | }} | ||
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==Disease== | ==Disease== | ||
| - | Known | + | Known disease associated with this structure: Arts syndrome OMIM:[[http://www.ncbi.nlm.nih.gov/entrez/dispomim.cgi?id=311850 311850]], Charcot-Marie-Tooth disease, X-linked recessive, 5 OMIM:[[http://www.ncbi.nlm.nih.gov/entrez/dispomim.cgi?id=311850 311850]], Gout, PRPS-related OMIM:[[http://www.ncbi.nlm.nih.gov/entrez/dispomim.cgi?id=311850 311850]], Phosphoribosylpyrophosphate synthetase superactivity OMIM:[[http://www.ncbi.nlm.nih.gov/entrez/dispomim.cgi?id=311850 311850]] |
==About this Structure== | ==About this Structure== | ||
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[[Category: Li, S.]] | [[Category: Li, S.]] | ||
[[Category: Peng, B.]] | [[Category: Peng, B.]] | ||
| - | [[Category: SO4]] | ||
[[Category: mutant]] | [[Category: mutant]] | ||
[[Category: phosphoribosyl pyrophosphate synthetase 1]] | [[Category: phosphoribosyl pyrophosphate synthetase 1]] | ||
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[[Category: prs1]] | [[Category: prs1]] | ||
| - | ''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on | + | ''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Mon Mar 31 03:23:37 2008'' |
Revision as of 00:23, 31 March 2008
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| , resolution 2.20Å | |||||||
|---|---|---|---|---|---|---|---|
| Ligands: | |||||||
| Gene: | PRPS1 (Homo sapiens) | ||||||
| Activity: | Ribose-phosphate diphosphokinase, with EC number 2.7.6.1 | ||||||
| Related: | 2H06, 2H08
| ||||||
| Resources: | FirstGlance, OCA, PDBsum, RCSB | ||||||
| Coordinates: | save as pdb, mmCIF, xml | ||||||
crystal structure of human phosphoribosyl pyrophosphate synthetase 1 mutant S132A
Contents |
Overview
PRPP (phosphoribosylpyrophosphate) is an important metabolite essential for nucleotide synthesis and PRS (PRPP synthetase) catalyses synthesis of PRPP from R5P (ribose 5-phosphate) and ATP. The enzymatic activity of PRS is regulated by phosphate ions, divalent metal cations and ADP. In the present study we report the crystal structures of recombinant human PRS1 in complexes with SO4(2-) ions alone and with ATP, Cd2+ and SO4(2-) ions respectively. The AMP moiety of ATP binds at the ATP-binding site, and a Cd2+ ion binds at the active site and in a position to interact with the beta- and gamma-phosphates of ATP. A SO4(2-) ion, an analogue of the activator phosphate, was found to bind at both the R5P-binding site and the allosteric site defined previously. In addi-tion, an extra SO4(2-) binds at a site at the dimer interface between the ATP-binding site and the allosteric site. Binding of this SO4(2-) stabilizes the conformation of the flexible loop at the active site, leading to the formation of the active, open conformation which is essential for binding of ATP and initiation of the catalytic reaction. This is the first time that structural stabilization at the active site caused by binding of an activator has been observed. Structural and biochemical data show that mutations of some residues at this site influence the binding of SO4(2-) and affect the enzymatic activity. The results in the present paper suggest that this new SO4(2-)-binding site is a second allosteric site to regulate the enzymatic activity which might also exist in other eukaryotic PRSs (except plant PRSs of class II), but not in bacterial PRSs.
Disease
Known disease associated with this structure: Arts syndrome OMIM:[311850], Charcot-Marie-Tooth disease, X-linked recessive, 5 OMIM:[311850], Gout, PRPS-related OMIM:[311850], Phosphoribosylpyrophosphate synthetase superactivity OMIM:[311850]
About this Structure
2H07 is a Single protein structure of sequence from Homo sapiens. Full crystallographic information is available from OCA.
Reference
Crystal structure of human phosphoribosylpyrophosphate synthetase 1 reveals a novel allosteric site., Li S, Lu Y, Peng B, Ding J, Biochem J. 2007 Jan 1;401(1):39-47. PMID:16939420
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