2hoi
From Proteopedia
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|PDB= 2hoi |SIZE=350|CAPTION= <scene name='initialview01'>2hoi</scene>, resolution 2.601Å | |PDB= 2hoi |SIZE=350|CAPTION= <scene name='initialview01'>2hoi</scene>, resolution 2.601Å | ||
|SITE= | |SITE= | ||
| - | |LIGAND= | + | |LIGAND= <scene name='pdbligand=DA:2'-DEOXYADENOSINE-5'-MONOPHOSPHATE'>DA</scene>, <scene name='pdbligand=DC:2'-DEOXYCYTIDINE-5'-MONOPHOSPHATE'>DC</scene>, <scene name='pdbligand=DG:2'-DEOXYGUANOSINE-5'-MONOPHOSPHATE'>DG</scene>, <scene name='pdbligand=DT:THYMIDINE-5'-MONOPHOSPHATE'>DT</scene> |
|ACTIVITY= | |ACTIVITY= | ||
|GENE= | |GENE= | ||
| + | |DOMAIN= | ||
| + | |RELATEDENTRY=[[1crx|1CRX]], [[4crx|4CRX]], [[2hof|2HOF]] | ||
| + | |RESOURCES=<span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2hoi FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2hoi OCA], [http://www.ebi.ac.uk/pdbsum/2hoi PDBsum], [http://www.rcsb.org/pdb/explore.do?structureId=2hoi RCSB]</span> | ||
}} | }} | ||
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==About this Structure== | ==About this Structure== | ||
| - | 2HOI is a [[Single protein]] structure of sequence from [http://en.wikipedia.org/wiki/ | + | 2HOI is a [[Single protein]] structure of sequence from [http://en.wikipedia.org/wiki/Enterobacteria_phage_p1 Enterobacteria phage p1]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2HOI OCA]. |
==Reference== | ==Reference== | ||
Synapsis of loxP sites by Cre recombinase., Ghosh K, Guo F, Van Duyne GD, J Biol Chem. 2007 Aug 17;282(33):24004-16. Epub 2007 Jun 15. PMID:[http://www.ncbi.nlm.nih.gov/pubmed/17573343 17573343] | Synapsis of loxP sites by Cre recombinase., Ghosh K, Guo F, Van Duyne GD, J Biol Chem. 2007 Aug 17;282(33):24004-16. Epub 2007 Jun 15. PMID:[http://www.ncbi.nlm.nih.gov/pubmed/17573343 17573343] | ||
| - | [[Category: | + | [[Category: Enterobacteria phage p1]] |
[[Category: Single protein]] | [[Category: Single protein]] | ||
[[Category: Duyne, G D.Van.]] | [[Category: Duyne, G D.Van.]] | ||
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[[Category: recombination/dna complex]] | [[Category: recombination/dna complex]] | ||
| - | ''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on | + | ''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Mon Mar 31 03:33:08 2008'' |
Revision as of 00:33, 31 March 2008
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| , resolution 2.601Å | |||||||
|---|---|---|---|---|---|---|---|
| Ligands: | , , , | ||||||
| Related: | 1CRX, 4CRX, 2HOF
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| Resources: | FirstGlance, OCA, PDBsum, RCSB | ||||||
| Coordinates: | save as pdb, mmCIF, xml | ||||||
Crystal structure of the tetrameric pre-cleavage synaptic complex in the cre-loxp site-specific recombination
Overview
Cre recombinase catalyzes site-specific recombination between 34-bp loxP sites in a variety of topological and cellular contexts. An obligatory step in the recombination reaction is the association, or synapsis, of Cre-bound loxP sites to form a tetrameric protein assembly that is competent for strand exchange. Using analytical ultracentrifugation and electrophoresis approaches, we have studied the energetics of Cre-mediated synapsis of loxP sites. We found that synapsis occurs with a high affinity (Kd = 10 nM) and is pH-dependent but does not require divalent cations. Surprisingly, the catalytically inactive Cre K201A mutant is fully competent for synapsis of loxP sites, yet the inactive Y324F and R173K mutants are defective for synapsis. These findings have allowed us to determine the first crystal structures of a pre-cleavage Cre-loxP synaptic complex in a configuration representing the starting point in the recombination pathway. When combined with a quantitative analysis of synapsis using loxP mutants, the structures explain how the central 8 bp of the loxP site are able to dictate the order of strand exchange in the Cre system.
About this Structure
2HOI is a Single protein structure of sequence from Enterobacteria phage p1. Full crystallographic information is available from OCA.
Reference
Synapsis of loxP sites by Cre recombinase., Ghosh K, Guo F, Van Duyne GD, J Biol Chem. 2007 Aug 17;282(33):24004-16. Epub 2007 Jun 15. PMID:17573343
Page seeded by OCA on Mon Mar 31 03:33:08 2008
