2iav
From Proteopedia
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|PDB= 2iav |SIZE=350|CAPTION= <scene name='initialview01'>2iav</scene>, resolution 1.07Å | |PDB= 2iav |SIZE=350|CAPTION= <scene name='initialview01'>2iav</scene>, resolution 1.07Å | ||
|SITE= | |SITE= | ||
| - | |LIGAND= <scene name='pdbligand=CA:CALCIUM ION'>CA</scene> | + | |LIGAND= <scene name='pdbligand=CA:CALCIUM+ION'>CA</scene> |
| - | |ACTIVITY= [http://en.wikipedia.org/wiki/Diisopropyl-fluorophosphatase Diisopropyl-fluorophosphatase], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=3.1.8.2 3.1.8.2] | + | |ACTIVITY= <span class='plainlinks'>[http://en.wikipedia.org/wiki/Diisopropyl-fluorophosphatase Diisopropyl-fluorophosphatase], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=3.1.8.2 3.1.8.2] </span> |
|GENE= | |GENE= | ||
| + | |DOMAIN= | ||
| + | |RELATEDENTRY=[[1e1a|1E1A]], [[1pjx|1PJX]] | ||
| + | |RESOURCES=<span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2iav FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2iav OCA], [http://www.ebi.ac.uk/pdbsum/2iav PDBsum], [http://www.rcsb.org/pdb/explore.do?structureId=2iav RCSB]</span> | ||
}} | }} | ||
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[[Category: Maurer, S.]] | [[Category: Maurer, S.]] | ||
[[Category: Rueterjans, H.]] | [[Category: Rueterjans, H.]] | ||
| - | [[Category: CA]] | ||
[[Category: beta-propeller]] | [[Category: beta-propeller]] | ||
[[Category: calcium-binding site]] | [[Category: calcium-binding site]] | ||
[[Category: phosphotriesterase]] | [[Category: phosphotriesterase]] | ||
| - | ''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on | + | ''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Mon Mar 31 03:41:51 2008'' |
Revision as of 00:41, 31 March 2008
| |||||||
| , resolution 1.07Å | |||||||
|---|---|---|---|---|---|---|---|
| Ligands: | |||||||
| Activity: | Diisopropyl-fluorophosphatase, with EC number 3.1.8.2 | ||||||
| Related: | 1E1A, 1PJX
| ||||||
| Resources: | FirstGlance, OCA, PDBsum, RCSB | ||||||
| Coordinates: | save as pdb, mmCIF, xml | ||||||
Crystal structure of squid ganglion DFPase H287A mutant
Overview
The active site, the substrate binding site, and the metal binding sites of the diisopropylfluorophosphatase (DFPase) from Loligo vulgaris have been modified by means of site-directed mutagenesis to improve our understanding of the reaction mechanism. Enzymatic characterization of mutants located in the major groove of the substrate binding pocket indicates that large hydrophobic side chains at these positions are favorable for substrate turnover. Moreover, the active site residue His287 proved to be beneficial, but not essential, for DFP hydrolysis. In most cases, hydrophobic side chains at position 287 led to significant catalytic activities although reduced relative to the wild-type enzyme. With respect to the Ca-1 binding site, where catalysis occurs, various mutants indicated that the net charge at this calcium-binding site as well as the relative positions of the charged calcium ligands is crucial for catalytic activity. The importance of the electrostatic potential at the active site was furthermore revealed by various mutations of residues lining the interior of the central water-filled tunnel, which traverses the entire protein structure. In this respect, the structural features of residue His181, which is located at the opposite end of the DFPase tunnel relative to the active site, were characterized extensively. It was concluded that a tunnel-spanning hydrogen bond network, which includes a large number of apparently slow exchanging water molecules, relays any modifications in the electrostatics of the system to the active site, thus affecting the catalytic reactivity of the enzyme.
About this Structure
2IAV is a Single protein structure of sequence from Loligo vulgaris. Full crystallographic information is available from OCA.
Reference
Mutational and structural studies of the diisopropylfluorophosphatase from Loligo vulgaris shed new light on the catalytic mechanism of the enzyme., Katsemi V, Lucke C, Koepke J, Lohr F, Maurer S, Fritzsch G, Ruterjans H, Biochemistry. 2005 Jun 28;44(25):9022-33. PMID:15966726
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