Tachyplesin

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The β-hairpin topology of CDT is sustained by the <scene name='67/671725/Cdthaipin/2'>unique packing interactions</scene> between the aromatic ring of Trp2 and the sidechain of nonpolar amino acid of Val5 and the cationic sidechain of residue Arg11.
The β-hairpin topology of CDT is sustained by the <scene name='67/671725/Cdthaipin/2'>unique packing interactions</scene> between the aromatic ring of Trp2 and the sidechain of nonpolar amino acid of Val5 and the cationic sidechain of residue Arg11.
There is a close proximity between residues <scene name='67/671725/Cdtnoe/1'>Trp2 and Ile9</scene>, supported by the [http://en.wikipedia.org/wiki/Nuclear_Overhauser_effect nuclear overhauser effects (NOEs)] involving [http://en.wikipedia.org/wiki/Indole indole] ring protons of Trp2 with sidechain proton of Ile9. These packing interactions have rendered an approximate anti-parallel orientation of the hairpin structure of CDT in presence of LPS.
There is a close proximity between residues <scene name='67/671725/Cdtnoe/1'>Trp2 and Ile9</scene>, supported by the [http://en.wikipedia.org/wiki/Nuclear_Overhauser_effect nuclear overhauser effects (NOEs)] involving [http://en.wikipedia.org/wiki/Indole indole] ring protons of Trp2 with sidechain proton of Ile9. These packing interactions have rendered an approximate anti-parallel orientation of the hairpin structure of CDT in presence of LPS.
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The β-hairpin like structure of CDT displays an extended <font color='darkblue'>positively charged</font> surface patch of <scene name='67/671725/Cdtr4r7r12r13/1'>residues Arg 4, 7, 12 and 13</scene>. These basic residues would be interacting, salt bridges and/or hydrogen bonds, with the anionic phosphate groups of LPS.
+
The β-hairpin like structure of CDT displays an extended <font color='darkblue'>positively charged</font> surface patch of <scene name='67/671725/Cdtr4r7r12r13/1'>residues Arg 4, 7, 12 and 13</scene>. These positively charged basic residues interacts with the anionic phosphate groups of LPS with the help of salt bridges and/or hydrogen bonds.
The interactions between CDT and LPS may lead to a plausible disruption or fluidization of LPS structures facilitating traversal of the peptide through the LPS-outer membrane.<ref name=Saravanan>PMID:22464970</ref>
The interactions between CDT and LPS may lead to a plausible disruption or fluidization of LPS structures facilitating traversal of the peptide through the LPS-outer membrane.<ref name=Saravanan>PMID:22464970</ref>

Revision as of 11:18, 7 January 2015

Introduction

1MA2

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References

  1. 1.0 1.1 1.2 Laederach A, Andreotti AH, Fulton DB. Solution and micelle-bound structures of tachyplesin I and its active aromatic linear derivatives. Biochemistry. 2002 Oct 15;41(41):12359-68. PMID:12369825
  2. 2.0 2.1 Chen, Yixin, et al. "RGD-Tachyplesin inhibits tumor growth." Cancer research 61.6 (2001): 2434-2438.‏
  3. Nakamura, Takanori, et al. "Tachyplesin, a class of antimicrobial peptide from the hemocytes of the horseshoe crab (Tachypleus tridentatus). Isolation and chemical structure." Journal of Biological Chemistry 263.32 (1988): 16709-16713
  4. Kushibiki T, Kamiya M, Aizawa T, Kumaki Y, Kikukawa T, Mizuguchi M, Demura M, Kawabata SI, Kawano K. Interaction between tachyplesin I, an antimicrobial peptide derived from horseshoe crab, and lipopolysaccharide. Biochim Biophys Acta. 2014 Jan 2;1844(3):527-534. doi:, 10.1016/j.bbapap.2013.12.017. PMID:24389234 doi:http://dx.doi.org/10.1016/j.bbapap.2013.12.017
  5. 5.0 5.1 Saravanan R, Mohanram H, Joshi M, Domadia PN, Torres J, Ruedl C, Bhattacharjya S. Structure, activity and interactions of the cysteine deleted analog of tachyplesin-1 with lipopolysaccharide micelle: Mechanistic insights into outer-membrane permeabilization and endotoxin neutralization. Biochim Biophys Acta. 2012 Mar 23;1818(7):1613-1624. PMID:22464970 doi:10.1016/j.bbamem.2012.03.015
  6. 6.0 6.1 6.2 Hong, Jun, et al. "Mechanism of tachyplesin I injury to bacterial membranes and intracellular enzymes, determined by laser confocal scanning microscopy and flow cytometry." Microbiological research (2014).‏
  7. Yonezawa A, Kuwahara J, Fujii N, Sugiura Y. Binding of tachyplesin I to DNA revealed by footprinting analysis: significant contribution of secondary structure to DNA binding and implication for biological action. Biochemistry. 1992 Mar 24;31(11):2998-3004. PMID:1372516
  8. Lipsky A, Cohen A, Ion A, Yedidia I. Genetic transformation of Ornithogalum via particle bombardment and generation of Pectobacterium carotovorum-resistant plants. Plant Sci. 2014 Nov;228:150-8. doi: 10.1016/j.plantsci.2014.02.002. Epub 2014 Feb, 12. PMID:25438795 doi:http://dx.doi.org/10.1016/j.plantsci.2014.02.002

Quiz

1. TP-I is..

A Gram-negative bacteria
A Gram-positive bacteria
leukocytes of Japanese
An antimicrobial peptide

2. How many residues TP-I has?

16
14
17
15

3. What is the secondery structure of TP-I?

Two antiparallel β-sheet
Two antiparallel α-Helixes
Two parallel β-sheet
Two parallel α-Helixes

4. Which of the following derivatives is inactive?

TPF4
TPY4
TPA4
CDT

5. How many cationic residues TP-I has?

7
6
16
14

6. How many negative amino acids TP-I has?

One
Non
Two
Six

Your score is 0 / 0
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