User:Caroline Cuer/Sandbox 1
From Proteopedia
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The understanding of the interaction of IL-33 with its receptors has been discovered thanks to the determination of the crystal structure of IL-33 in complex with ectodomain of ST2. | The understanding of the interaction of IL-33 with its receptors has been discovered thanks to the determination of the crystal structure of IL-33 in complex with ectodomain of ST2. | ||
- | Besides, the combination of crystallography and small-angle X-ray-scattering methods reveal that ST2 has a very flexible conformation, contrary to IL-1RAcP. In fact, ST2 is constituted of three IgG-like domains (<scene name='61/614056/Domains_d1d2d3_de_st2/1'>D1 to D3</scene>). D1 and D2 gather to form a single D1D2 module, connected through a linker with the D3 domain. ST2 contains also three residues linked with NAG. | + | Besides, the combination of crystallography and small-angle X-ray-scattering methods reveal that ST2 has a very flexible conformation, contrary to IL-1RAcP. In fact, ST2 is constituted of three IgG-like domains (<scene name='61/614056/Domains_d1d2d3_de_st2/1'>D1 to D3</scene>). D1 and D2 gather to form a single D1D2 module, connected through a linker with the D3 domain. ST2 contains also <scenename='61/614056/Three_residues_of_st2_with_nag/3'>three residues</scene> linked with NAG and an hydrophobic patch. |
This conformational specificity provides a capactity of ligand-binding with IL-33. Moreover, the rigidity of IL-1RAcP explains that it can not bind the IL-33 ligand directly. | This conformational specificity provides a capactity of ligand-binding with IL-33. Moreover, the rigidity of IL-1RAcP explains that it can not bind the IL-33 ligand directly. | ||
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The model includes IL-33 residues Ser117 to Ser268 and ST2 residues Ser21 to Arg317. | The model includes IL-33 residues Ser117 to Ser268 and ST2 residues Ser21 to Arg317. | ||
- | The structure of IL-33 consists in a <scene name='61/614056/Beta_sheet_of_il33/2'>12 β-strands</scene> forming a β-trefoil structure. It also contains an alpha helix. Specific loops, such as the β4-β5 loop, are involved in the interaction with the accessory receptor IL-1RAcP when IL-33 is bound to ST2. | + | The structure of IL-33 consists in a <scene name='61/614056/Beta_sheet_of_il33/2'>12 β-strands</scene> forming a β-trefoil structure. It also contains an <scene name='61/614056/Il33_alpha_helix/1'>alpha helix</scene>. Specific loops, such as the β4-β5 loop, are involved in the interaction with the accessory receptor IL-1RAcP when IL-33 is bound to ST2. |
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In the complex, IL-33 interacts with the three domains of ST2. The binding interface is very large and composed of two separate sites. | In the complex, IL-33 interacts with the three domains of ST2. The binding interface is very large and composed of two separate sites. | ||
- | In the first binding site, thirteen IL-33 residues from β-loops are in contact with the D1D2 module of ST2: the four marked acids residues of IL-33 form a salt-bridge with five marked ST2 residues respectively. Besides, Glu144 and Asp149 form hydrogen bonds with main-chain atoms of ST2. IL-33 mutation of one of the acid residues (144, 148, 149 and 244) highly decreases the affinity of ST2 for IL-33. | + | In the <scene name='61/614056/Interaction_site_1/5'>first binding site</scene>, thirteen IL-33 residues from β-loops are in contact with the D1D2 module of ST2: the four marked acids residues of IL-33 form a salt-bridge with five marked ST2 residues respectively. Besides, Glu144 and Asp149 form hydrogen bonds with main-chain atoms of ST2. IL-33 mutation of one of the acid residues (144, 148, 149 and 244) highly decreases the affinity of ST2 for IL-33. |
- | In the second binding site, eight IL-33 residues from β-strands interact with the D3 domain of ST2. | + | In the <scene name='61/614056/Interaction_site_2/2'>second binding site</scene>, eight IL-33 residues from β-strands interact with the D3 domain of ST2. |
There are both hydrophobic and hydrophilic interactions. Residues of IL-33 form an hydrophobic cluster (IL-33 residues Tyr163 and Leu182 and ST2 residues Leu246, Leu306, and Leu311). A salt-bridge interaction occurs between acidic residue Glu165 and Arg313 of ST2. | There are both hydrophobic and hydrophilic interactions. Residues of IL-33 form an hydrophobic cluster (IL-33 residues Tyr163 and Leu182 and ST2 residues Leu246, Leu306, and Leu311). A salt-bridge interaction occurs between acidic residue Glu165 and Arg313 of ST2. |
Revision as of 12:48, 8 January 2015
ST2/IL33 complex
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References
1. Xi Liua, Michal Hammelb, Yanfeng Hea, John A. Tainerc,d, U-Ser Jenge, Linqi Zhangf, Shuying Wangg, and Xinquan Wanga Structural insights into the interaction of IL-33 with its receptors (2013) DOI: 10.1073/pnas.1308651110
2. Ananda S. Mirchandani, Robert J. Salmond, Foo Y. Interleukin-33 and the function of innate lymphoid cells (2012) DOI: 10.1016/j.it.2012.04.005
3. Rahul Kakkar & Richard T. Lee. The IL-33/ST2 pathway: therapeutic target and novel biomarker (2008) DOI: 10.1038/nrd2660
4. Lécart S, Lecointe N, Subramaniam A, Alkan S, Ni D, Chen R, Boulay V, Pène J, Kuroiwa K, Tominaga S, Yssel H. Activated, but not resting human Th2 cells, in contrast to Th1 and T regulatory cells, produce soluble ST2 and express low levels of ST2L at the cell surface. http://www.ncbi.nlm.nih.gov/pubmed/12355452
5. Chia-Lin Hsu and Paul J Bryce. Inducible IL-33 expression by mast cells is regulated by a calcium-dependent pathway. http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3541686/
N | C |
Lien vert pour afficher les deux protéines :
Lien pour faire apparaitre les trois résidus de ST2 liés chacun à un NAG : Lien pour faire apparaitre le site 1 d'interaction entre ST2 et IL33 : Faire apparaitre les feuillets beta de IL33 : Lien pour faire apparaitre le site 2 d'interaction entre ST2 et IL33 : Lien pour faire apparatire l'hélice alpha de IL33 : Lien pour la poche hydrophobe de st2 : Lien pour les domaines D1 D2 D3 :