Sandbox Reserved 972

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==Insuline degrading enzyme (IDE)==
==Insuline degrading enzyme (IDE)==
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IDE (EC 3.4.24.56) is a human enzyme of the metallopeptidase family, not well-known yet. It is composed by more than 1000 residues and has a huge catalytic cavity. It is made of 2 parts linked by a loop, and it switches between an open and a close state. The size of its catalytic chamber allows the binding of peptides (70 amino acids long). IDE hydrolyzes a lot of substrates which have many differents biological activities. Its substrate can be insuline, glucagon, amyline or bradykinin.
IDE (EC 3.4.24.56) is a human enzyme of the metallopeptidase family, not well-known yet. It is composed by more than 1000 residues and has a huge catalytic cavity. It is made of 2 parts linked by a loop, and it switches between an open and a close state. The size of its catalytic chamber allows the binding of peptides (70 amino acids long). IDE hydrolyzes a lot of substrates which have many differents biological activities. Its substrate can be insuline, glucagon, amyline or bradykinin.
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===Exosite: an essential element for the catalysis===
===Exosite: an essential element for the catalysis===
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==Bradykinin==
==Bradykinin==
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Bradykinin is a short nonapeptide of the family of kinins. It's in response to an inflammatory envent and serves as a mediator of pain, inflammation and vasodilatation.
Bradykinin is a short nonapeptide of the family of kinins. It's in response to an inflammatory envent and serves as a mediator of pain, inflammation and vasodilatation.
Today, we know that kinins can be degraded by IDE.
Today, we know that kinins can be degraded by IDE.
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==Hypothetical role of bradykinin on IDE==
==Hypothetical role of bradykinin on IDE==
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Today, we can supposed that binding of bradykinin at the exosite stimulated the conformationnal change of IDE, from its open to its close state.
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==Degradation reaction of bradykinin by IDE==
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We can also suggests that IDE binds 2 bradykinin thanks to their small lenght.
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Recent studies have shown that the cleavage site is located between residues Pro7 and Phe8.
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Revision as of 23:05, 8 January 2015

This Sandbox is Reserved from 15/11/2014, through 15/05/2015 for use in the course "Biomolecule" taught by Bruno Kieffer at the Strasbourg University. This reservation includes Sandbox Reserved 951 through Sandbox Reserved 975.
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References

  1. Hanson, R. M., Prilusky, J., Renjian, Z., Nakane, T. and Sussman, J. L. (2013), JSmol and the Next-Generation Web-Based Representation of 3D Molecular Structure as Applied to Proteopedia. Isr. J. Chem., 53:207-216. doi:http://dx.doi.org/10.1002/ijch.201300024
  2. Herraez A. Biomolecules in the computer: Jmol to the rescue. Biochem Mol Biol Educ. 2006 Jul;34(4):255-61. doi: 10.1002/bmb.2006.494034042644. PMID:21638687 doi:10.1002/bmb.2006.494034042644
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