Sandbox Reserved 974

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Current revision (09:21, 9 January 2015) (edit) (undo)
 
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== Structural highlights ==
== Structural highlights ==
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For the monomeric NT helix 2 and helix 3 forme a subunit and helix 1,4 and 5 forme a second subunit. There is a rotation of 16° between the subunits to create an open five-helix. In the dimeric NT helix 2,3 and 5 create a subunits, this changing of conformation is mostly induced by the burial of <scene name='60/604493/Tryptophane10/1'>tryptophan 10</scene>. So this amino acid go from hydophobic environment to hydrophilic environment. This conformation is stablized by the interaction of <scene name='60/604493/Aspartate40/1'>Aspartic acid 40</scene> (the beginning of helix 2) and E84 (at the end of helix 3). This interaction is impossible in monomeric NT because the two amino acids are separate by more of 10 Å. Also the protonation of <scene name='60/604493/Aspartate79-119/1'>aspartic acids 79 and 119</scene> is most important event to pass from the monomeric form to the dimeric form between pH 6 and 7. But if the pH lowering too much (below pH 4) <scene name='60/604493/Aspartate40/1'>Aspartic acid 40</scene> will be protonated and this destablize the dimer.
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For the monomeric NT helix 2 and helix 3 forme a subunit and helix 1,4 and 5 forme a second subunit. There is a rotation of 16° between the subunits to create an open five-helix. In the dimeric NT helix 2,3 and 5 create a subunits, this changing of conformation is mostly induced by the burial of <scene name='60/604493/Tryptophane10/1'>tryptophan 10</scene>. So this amino acid go from hydophobic environment to hydrophilic environment. This conformation is stablized by the interaction of <scene name='60/604493/Aspartate40/1'>Aspartic acid 40</scene> (the beginning of helix 2) and glutamic acid 84 (at the end of helix 3). This interaction is impossible in monomeric NT because the two amino acids are separate by more of 10 Å. Also the protonation of <scene name='60/604493/Aspartate79-119/1'>aspartic acids 79 and 119</scene> is most important event to pass from the monomeric form to the dimeric form between pH 6 and 7. But if the pH lowering too much (below pH 4) <scene name='60/604493/Aspartate40/1'>Aspartic acid 40</scene> will be protonated and this destablize the dimer.
<scene name='60/604493/Tryptophane10/1'>Tryptophan 10</scene> is very conserverved in most of the species but it can be repleased by phenylalanin.
<scene name='60/604493/Tryptophane10/1'>Tryptophan 10</scene> is very conserverved in most of the species but it can be repleased by phenylalanin.

Current revision

This Sandbox is Reserved from 15/11/2014, through 15/05/2015 for use in the course "Biomolecule" taught by Bruno Kieffer at the Strasbourg University. This reservation includes Sandbox Reserved 951 through Sandbox Reserved 975.
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Structure of monomeric NT from Euprosthenops australis Major Ampullate Spidroin 1 (MaSp1)

Caption for this structure

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References

pH-dependent dimerization of spider silk N-terminal domain requires relocation of a wedged tryptophan side chain: http://www.ncbi.nlm.nih.gov/pubmed/22706024

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