4r0i

From Proteopedia

(Difference between revisions)
Jump to: navigation, search
Line 1: Line 1:
-
'''Unreleased structure'''
+
==CRYSTAL STRUCTURE of MATRIPTASE in COMPLEX WITH INHIBITOR==
 +
<StructureSection load='4r0i' size='340' side='right' caption='[[4r0i]], [[Resolution|resolution]] 1.90&Aring;' scene=''>
 +
== Structural highlights ==
 +
<table><tr><td colspan='2'>[[4r0i]] is a 2 chain structure. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=4R0I OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=4R0I FirstGlance]. <br>
 +
</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=3KM:3-({(2S)-3-[4-(2-AMINOETHYL)PIPERIDIN-1-YL]-2-[(NAPHTHALEN-2-YLSULFONYL)AMINO]-3-OXOPROPYL}OXY)BENZENECARBOXIMIDAMIDE'>3KM</scene></td></tr>
 +
<tr id='activity'><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[http://en.wikipedia.org/wiki/Matriptase Matriptase], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=3.4.21.109 3.4.21.109] </span></td></tr>
 +
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=4r0i FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=4r0i OCA], [http://www.rcsb.org/pdb/explore.do?structureId=4r0i RCSB], [http://www.ebi.ac.uk/pdbsum/4r0i PDBsum]</span></td></tr>
 +
</table>
 +
== Disease ==
 +
[[http://www.uniprot.org/uniprot/ST14_HUMAN ST14_HUMAN]] Defects in ST14 are a cause of ichthyosis autosomal recessive with hypotrichosis (ARIH) [MIM:[http://omim.org/entry/610765 610765]]. ARIH is a skin disorder characterized by congenital ichthyosis associated with the presence of less than the normal amount of hair.<ref>PMID:17273967</ref>
 +
== Function ==
 +
[[http://www.uniprot.org/uniprot/ST14_HUMAN ST14_HUMAN]] Degrades extracellular matrix. Proposed to play a role in breast cancer invasion and metastasis. Exhibits trypsin-like activity as defined by cleavage of synthetic substrates with Arg or Lys as the P1 site.
 +
<div style="background-color:#fffaf0;">
 +
== Publication Abstract from PubMed ==
 +
Matriptase is a cell-surface trypsin-like serine protease of epithelial origin, which cleaves and activates proteins including hepatocyte growth factor/scatter factor and proteases such as uPA, which are involved in the progression of various cancers. Here we report a fragment-linking approach, which led to the discovery of O-(3-carbamimidoylphenyl)-l-serine amides as potent matriptase inhibitors. The co-crystal structure of one of the potent inhibitors, 6 in complex with matriptase catalytic domain validated the working hypothesis guiding the development of this congeneric series and revealed the structural basis for matriptase inhibition. Replacement of a naphthyl group in 6 with 2,4,6-tri-isopropyl phenyl resulted in 10 with improved matriptase inhibition, which exhibited significant primary tumor growth inhibition in a mouse model of prostate cancer. Compounds such as 10, identified using a fragment-linking approach, can be explored further to understand the role of matriptase as a drug target in cancer and inflammation.
-
The entry 4r0i is ON HOLD until Paper Publication
+
Discovery of O-(3-carbamimidoylphenyl)-l-serine amides as matriptase inhibitors using a fragment-linking approach.,Goswami R, Wohlfahrt G, Mukherjee S, Ghadiyaram C, Nagaraj J, Satyam LK, Subbarao K, Gopinath S, Krishnamurthy NR, Subramanya HS, Ramachandra M Bioorg Med Chem Lett. 2015 Feb 1;25(3):616-20. doi: 10.1016/j.bmcl.2014.12.008., Epub 2014 Dec 17. PMID:25556099<ref>PMID:25556099</ref>
-
Authors: Rao, K.N., Ashok, K.N., Chakshusmathi, G., Rajeev, G., Subramanya, H.
+
From MEDLINE&reg;/PubMed&reg;, a database of the U.S. National Library of Medicine.<br>
-
 
+
</div>
-
Description: CRYSTAL STRUCTURE of MATRIPTASE in COMPLEX WITH INHIBITOR
+
== References ==
-
[[Category: Unreleased Structures]]
+
<references/>
 +
__TOC__
 +
</StructureSection>
 +
[[Category: Matriptase]]
 +
[[Category: Ashok, K N]]
[[Category: Chakshusmathi, G]]
[[Category: Chakshusmathi, G]]
 +
[[Category: Rajeev, G]]
 +
[[Category: Rao, K N]]
[[Category: Subramanya, H]]
[[Category: Subramanya, H]]
-
[[Category: Rajeev, G]]
+
[[Category: Complex structure]]
-
[[Category: Rao, K.N]]
+
[[Category: Hydrolase]]
-
[[Category: Ashok, K.N]]
+
[[Category: Protease]]
 +
[[Category: Small molecule inhibitor]]
 +
[[Category: Trypsin-like serine proteinase fold]]

Revision as of 11:51, 12 February 2015

CRYSTAL STRUCTURE of MATRIPTASE in COMPLEX WITH INHIBITOR

4r0i, resolution 1.90Å

Drag the structure with the mouse to rotate

Proteopedia Page Contributors and Editors (what is this?)

OCA

Personal tools