This old version of Proteopedia is provided for student assignments while the new version is undergoing repairs. Content and edits done in this old version of Proteopedia after March 1, 2026 will eventually be lost when it is retired in about June of 2026.
Apply for new accounts at the new Proteopedia. Your logins will work in both the old and new versions.
2vpa
From Proteopedia
(Difference between revisions)
| Line 1: | Line 1: | ||
| + | |||
==High resolution crystal structure of the antibiotic resistance protein NimA from Deinococcus radiodurans== | ==High resolution crystal structure of the antibiotic resistance protein NimA from Deinococcus radiodurans== | ||
<StructureSection load='2vpa' size='340' side='right' caption='[[2vpa]], [[Resolution|resolution]] 1.20Å' scene=''> | <StructureSection load='2vpa' size='340' side='right' caption='[[2vpa]], [[Resolution|resolution]] 1.20Å' scene=''> | ||
== Structural highlights == | == Structural highlights == | ||
| - | <table><tr><td colspan='2'>[[2vpa]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/ | + | <table><tr><td colspan='2'>[[2vpa]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/"micrococcus_radiodurans"_raj_et_al._1960 "micrococcus radiodurans" raj et al. 1960]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2VPA OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2VPA FirstGlance]. <br> |
</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=ACT:ACETATE+ION'>ACT</scene>, <scene name='pdbligand=PYR:PYRUVIC+ACID'>PYR</scene></td></tr> | </td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=ACT:ACETATE+ION'>ACT</scene>, <scene name='pdbligand=PYR:PYRUVIC+ACID'>PYR</scene></td></tr> | ||
<tr id='related'><td class="sblockLbl"><b>[[Related_structure|Related:]]</b></td><td class="sblockDat">[[1w3q|1w3q]], [[1w3o|1w3o]], [[1w3p|1w3p]], [[1w3r|1w3r]]</td></tr> | <tr id='related'><td class="sblockLbl"><b>[[Related_structure|Related:]]</b></td><td class="sblockDat">[[1w3q|1w3q]], [[1w3o|1w3o]], [[1w3p|1w3p]], [[1w3r|1w3r]]</td></tr> | ||
| - | <tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2vpa FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2vpa OCA], [http://www.rcsb.org/pdb/explore.do?structureId=2vpa RCSB], [http://www.ebi.ac.uk/pdbsum/2vpa PDBsum]</span></td></tr> | + | <tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2vpa FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2vpa OCA], [http://pdbe.org/2vpa PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=2vpa RCSB], [http://www.ebi.ac.uk/pdbsum/2vpa PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=2vpa ProSAT]</span></td></tr> |
</table> | </table> | ||
== Evolutionary Conservation == | == Evolutionary Conservation == | ||
| Line 15: | Line 16: | ||
<text>to colour the structure by Evolutionary Conservation</text> | <text>to colour the structure by Evolutionary Conservation</text> | ||
</jmolCheckbox> | </jmolCheckbox> | ||
| - | </jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/ | + | </jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=2vpa ConSurf]. |
<div style="clear:both"></div> | <div style="clear:both"></div> | ||
<div style="background-color:#fffaf0;"> | <div style="background-color:#fffaf0;"> | ||
| Line 25: | Line 26: | ||
From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.<br> | From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.<br> | ||
</div> | </div> | ||
| + | <div class="pdbe-citations 2vpa" style="background-color:#fffaf0;"></div> | ||
== References == | == References == | ||
<references/> | <references/> | ||
__TOC__ | __TOC__ | ||
</StructureSection> | </StructureSection> | ||
| - | [[Category: | + | [[Category: Micrococcus radiodurans raj et al. 1960]] |
[[Category: Leiros, H K.S]] | [[Category: Leiros, H K.S]] | ||
[[Category: Mcsweeney, S M]] | [[Category: Mcsweeney, S M]] | ||
Revision as of 21:26, 11 August 2016
High resolution crystal structure of the antibiotic resistance protein NimA from Deinococcus radiodurans
| |||||||||||

