This old version of Proteopedia is provided for student assignments while the new version is undergoing repairs. Content and edits done in this old version of Proteopedia after March 1, 2026 will eventually be lost when it is retired in about June of 2026.
Apply for new accounts at the new Proteopedia. Your logins will work in both the old and new versions.
3gdz
From Proteopedia
(Difference between revisions)
| Line 1: | Line 1: | ||
| + | |||
==Crystal structure of arginyl-tRNA synthetase from Klebsiella pneumoniae subsp. pneumoniae== | ==Crystal structure of arginyl-tRNA synthetase from Klebsiella pneumoniae subsp. pneumoniae== | ||
<StructureSection load='3gdz' size='340' side='right' caption='[[3gdz]], [[Resolution|resolution]] 2.20Å' scene=''> | <StructureSection load='3gdz' size='340' side='right' caption='[[3gdz]], [[Resolution|resolution]] 2.20Å' scene=''> | ||
== Structural highlights == | == Structural highlights == | ||
| - | <table><tr><td colspan='2'>[[3gdz]] is a 4 chain structure with sequence from [http://en.wikipedia.org/wiki/ | + | <table><tr><td colspan='2'>[[3gdz]] is a 4 chain structure with sequence from [http://en.wikipedia.org/wiki/Klep7 Klep7]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3GDZ OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=3GDZ FirstGlance]. <br> |
</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=EDO:1,2-ETHANEDIOL'>EDO</scene></td></tr> | </td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=EDO:1,2-ETHANEDIOL'>EDO</scene></td></tr> | ||
<tr id='NonStdRes'><td class="sblockLbl"><b>[[Non-Standard_Residue|NonStd Res:]]</b></td><td class="sblockDat"><scene name='pdbligand=MSE:SELENOMETHIONINE'>MSE</scene></td></tr> | <tr id='NonStdRes'><td class="sblockLbl"><b>[[Non-Standard_Residue|NonStd Res:]]</b></td><td class="sblockDat"><scene name='pdbligand=MSE:SELENOMETHIONINE'>MSE</scene></td></tr> | ||
| - | <tr id='gene'><td class="sblockLbl"><b>[[Gene|Gene:]]</b></td><td class="sblockDat">argS, KPN78578_23530, KPN_02388 ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id= | + | <tr id='gene'><td class="sblockLbl"><b>[[Gene|Gene:]]</b></td><td class="sblockDat">argS, KPN78578_23530, KPN_02388 ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=272620 KLEP7])</td></tr> |
<tr id='activity'><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[http://en.wikipedia.org/wiki/Arginine--tRNA_ligase Arginine--tRNA ligase], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=6.1.1.19 6.1.1.19] </span></td></tr> | <tr id='activity'><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[http://en.wikipedia.org/wiki/Arginine--tRNA_ligase Arginine--tRNA ligase], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=6.1.1.19 6.1.1.19] </span></td></tr> | ||
| - | <tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=3gdz FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3gdz OCA], [http://www.rcsb.org/pdb/explore.do?structureId=3gdz RCSB], [http://www.ebi.ac.uk/pdbsum/3gdz PDBsum], [http://www.topsan.org/Proteins/MCSG/3gdz TOPSAN]</span></td></tr> | + | <tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=3gdz FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3gdz OCA], [http://pdbe.org/3gdz PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=3gdz RCSB], [http://www.ebi.ac.uk/pdbsum/3gdz PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=3gdz ProSAT], [http://www.topsan.org/Proteins/MCSG/3gdz TOPSAN]</span></td></tr> |
</table> | </table> | ||
== Evolutionary Conservation == | == Evolutionary Conservation == | ||
| Line 17: | Line 18: | ||
<text>to colour the structure by Evolutionary Conservation</text> | <text>to colour the structure by Evolutionary Conservation</text> | ||
</jmolCheckbox> | </jmolCheckbox> | ||
| - | </jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/ | + | </jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=3gdz ConSurf]. |
<div style="clear:both"></div> | <div style="clear:both"></div> | ||
| Line 25: | Line 26: | ||
</StructureSection> | </StructureSection> | ||
[[Category: Arginine--tRNA ligase]] | [[Category: Arginine--tRNA ligase]] | ||
| - | [[Category: | + | [[Category: Klep7]] |
[[Category: Bearden, J]] | [[Category: Bearden, J]] | ||
[[Category: Chang, C]] | [[Category: Chang, C]] | ||
Revision as of 18:14, 11 August 2016
Crystal structure of arginyl-tRNA synthetase from Klebsiella pneumoniae subsp. pneumoniae
| |||||||||||
Categories: Arginine--tRNA ligase | Klep7 | Bearden, J | Chang, C | Joachimiak, A | Structural genomic | Wu, R | Aminoacyl-trna synthetase | Arginyl-trna synthetase | Atp-binding | Klebsiella pneumoniae subsp. pneumoniae mgh 78578 | Ligase | Mcsg | Nucleotide-binding | Protein biosynthesis | PSI, Protein structure initiative
