This old version of Proteopedia is provided for student assignments while the new version is undergoing repairs. Content and edits done in this old version of Proteopedia after March 1, 2026 will eventually be lost when it is retired in about June of 2026.
Apply for new accounts at the new Proteopedia. Your logins will work in both the old and new versions.
2wc4
From Proteopedia
(Difference between revisions)
| Line 1: | Line 1: | ||
| + | |||
==Structure of family 1 beta-glucosidase from Thermotoga maritima in complex with 3-imino-2-thia-(+)-castanospermine== | ==Structure of family 1 beta-glucosidase from Thermotoga maritima in complex with 3-imino-2-thia-(+)-castanospermine== | ||
<StructureSection load='2wc4' size='340' side='right' caption='[[2wc4]], [[Resolution|resolution]] 1.70Å' scene=''> | <StructureSection load='2wc4' size='340' side='right' caption='[[2wc4]], [[Resolution|resolution]] 1.70Å' scene=''> | ||
== Structural highlights == | == Structural highlights == | ||
| - | <table><tr><td colspan='2'>[[2wc4]] is a 4 chain structure with sequence from [http://en.wikipedia.org/wiki/ | + | <table><tr><td colspan='2'>[[2wc4]] is a 4 chain structure with sequence from [http://en.wikipedia.org/wiki/Atcc_43589 Atcc 43589]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2WC4 OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2WC4 FirstGlance]. <br> |
</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=ACT:ACETATE+ION'>ACT</scene>, <scene name='pdbligand=AMF:(3Z,5S,6R,7S,8R,8AS)-3-(OCTYLIMINO)HEXAHYDRO[1,3]THIAZOLO[3,4-A]PYRIDINE-5,6,7,8-TETROL'>AMF</scene>, <scene name='pdbligand=CA:CALCIUM+ION'>CA</scene>, <scene name='pdbligand=EDO:1,2-ETHANEDIOL'>EDO</scene></td></tr> | </td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=ACT:ACETATE+ION'>ACT</scene>, <scene name='pdbligand=AMF:(3Z,5S,6R,7S,8R,8AS)-3-(OCTYLIMINO)HEXAHYDRO[1,3]THIAZOLO[3,4-A]PYRIDINE-5,6,7,8-TETROL'>AMF</scene>, <scene name='pdbligand=CA:CALCIUM+ION'>CA</scene>, <scene name='pdbligand=EDO:1,2-ETHANEDIOL'>EDO</scene></td></tr> | ||
<tr id='related'><td class="sblockLbl"><b>[[Related_structure|Related:]]</b></td><td class="sblockDat">[[2wc3|2wc3]], [[1w3j|1w3j]], [[2j78|2j78]], [[2j75|2j75]], [[2j7g|2j7g]], [[2jal|2jal]], [[2vrj|2vrj]], [[2j7e|2j7e]], [[2cbu|2cbu]], [[2j7h|2j7h]], [[1oin|1oin]], [[2j7c|2j7c]], [[2cet|2cet]], [[1oif|1oif]], [[2j79|2j79]], [[2j7b|2j7b]], [[1uz1|1uz1]], [[1od0|1od0]], [[2ces|2ces]], [[2j7d|2j7d]], [[2j7f|2j7f]], [[2wbg|2wbg]], [[1oim|1oim]], [[2j77|2j77]], [[2cbv|2cbv]]</td></tr> | <tr id='related'><td class="sblockLbl"><b>[[Related_structure|Related:]]</b></td><td class="sblockDat">[[2wc3|2wc3]], [[1w3j|1w3j]], [[2j78|2j78]], [[2j75|2j75]], [[2j7g|2j7g]], [[2jal|2jal]], [[2vrj|2vrj]], [[2j7e|2j7e]], [[2cbu|2cbu]], [[2j7h|2j7h]], [[1oin|1oin]], [[2j7c|2j7c]], [[2cet|2cet]], [[1oif|1oif]], [[2j79|2j79]], [[2j7b|2j7b]], [[1uz1|1uz1]], [[1od0|1od0]], [[2ces|2ces]], [[2j7d|2j7d]], [[2j7f|2j7f]], [[2wbg|2wbg]], [[1oim|1oim]], [[2j77|2j77]], [[2cbv|2cbv]]</td></tr> | ||
<tr id='activity'><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[http://en.wikipedia.org/wiki/Beta-glucosidase Beta-glucosidase], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=3.2.1.21 3.2.1.21] </span></td></tr> | <tr id='activity'><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[http://en.wikipedia.org/wiki/Beta-glucosidase Beta-glucosidase], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=3.2.1.21 3.2.1.21] </span></td></tr> | ||
| - | <tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2wc4 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2wc4 OCA], [http://www.rcsb.org/pdb/explore.do?structureId=2wc4 RCSB], [http://www.ebi.ac.uk/pdbsum/2wc4 PDBsum]</span></td></tr> | + | <tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2wc4 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2wc4 OCA], [http://pdbe.org/2wc4 PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=2wc4 RCSB], [http://www.ebi.ac.uk/pdbsum/2wc4 PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=2wc4 ProSAT]</span></td></tr> |
</table> | </table> | ||
== Evolutionary Conservation == | == Evolutionary Conservation == | ||
| Line 16: | Line 17: | ||
<text>to colour the structure by Evolutionary Conservation</text> | <text>to colour the structure by Evolutionary Conservation</text> | ||
</jmolCheckbox> | </jmolCheckbox> | ||
| - | </jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/ | + | </jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=2wc4 ConSurf]. |
<div style="clear:both"></div> | <div style="clear:both"></div> | ||
<div style="background-color:#fffaf0;"> | <div style="background-color:#fffaf0;"> | ||
| Line 26: | Line 27: | ||
From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.<br> | From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.<br> | ||
</div> | </div> | ||
| + | <div class="pdbe-citations 2wc4" style="background-color:#fffaf0;"></div> | ||
==See Also== | ==See Also== | ||
| Line 33: | Line 35: | ||
__TOC__ | __TOC__ | ||
</StructureSection> | </StructureSection> | ||
| + | [[Category: Atcc 43589]] | ||
[[Category: Beta-glucosidase]] | [[Category: Beta-glucosidase]] | ||
| - | [[Category: Thermotoga maritima]] | ||
[[Category: Aguilar, M]] | [[Category: Aguilar, M]] | ||
[[Category: Davies, G J]] | [[Category: Davies, G J]] | ||
Revision as of 17:27, 11 August 2016
Structure of family 1 beta-glucosidase from Thermotoga maritima in complex with 3-imino-2-thia-(+)-castanospermine
| |||||||||||
Categories: Atcc 43589 | Beta-glucosidase | Aguilar, M | Davies, G J | Fernandez, J M.Garcia | Garcia-Moreno, M I | Gloster, T M | Mellet, C Ortiz | Turkenburg, J P | Carbohydrate metabolism | Castanospermine | Cellulose degradation | Family 1 | Glycosidase | Glycoside hydrolase | Hydrolase | Inhibitor | Polysaccharide degradation
